Fish Transcriptome and Expression Database

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model fish

XLOC_025392 (BX000529.1)

Basic Information

Item	Value
gene id	XLOC_025392
gene name	BX000529.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007114.7
NCBI id	CM002887.2
chromosome length	62628489
location	27407096 ~ 27407211 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050090
tgccacagccatatcaccctgcaacccaagaccggttactcataGAAGcttagcagggctgagcctggtagTGCCGGaatgggagatcacatgggagGGCTcgattgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000106124

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00050090	True	116	rRNA	0.55	1	27407096	27407211

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_025390	NA	coding	upstream	63407	27294308 ~ 27343689 (+)
XLOC_025389	grin2aa	coding	upstream	129401	27071749 ~ 27277695 (+)
XLOC_025388	emp2	coding	upstream	350916	27027781 ~ 27056180 (+)
XLOC_025387	dexi	coding	upstream	500745	26905024 ~ 26906351 (+)
XLOC_025386	socs1a	coding	upstream	592143	26813058 ~ 26814953 (+)
XLOC_025393	NA	coding	downstream	187162	27594373 ~ 27601473 (+)
XLOC_025394	usp7	coding	downstream	199294	27606505 ~ 27663447 (+)
XLOC_025395	clcn7	coding	downstream	257653	27664864 ~ 27709312 (+)
XLOC_025396	arhgdig	coding	downstream	306399	27713610 ~ 27769232 (+)
XLOC_025397	eci1	coding	downstream	362899	27770110 ~ 27777671 (+)
XLOC_025429	BX649540.1	misc	downstream	2841528	30248739 ~ 30249036 (+)
XLOC_025384	NA	non-coding	upstream	770698	26635820 ~ 26636398 (+)
XLOC_025383	NA	non-coding	upstream	990312	26411233 ~ 26416784 (+)
XLOC_025382	NA	non-coding	upstream	1045298	26355294 ~ 26361798 (+)
XLOC_025374	FP016144.1	non-coding	upstream	1212637	26194344 ~ 26194459 (+)
XLOC_025402	NA	non-coding	downstream	1242736	28649947 ~ 28733765 (+)
XLOC_025403	NA	non-coding	downstream	1358482	28765693 ~ 28783757 (+)
XLOC_025406	NA	non-coding	downstream	1491918	28899129 ~ 28926075 (+)
XLOC_025410	BX005369.1	non-coding	downstream	1759809	29167020 ~ 29167147 (+)

Expression

Co-expression Network