G611582


Basic Information

Item Value
gene id G611582
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44520554 ~ 44524972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU696292
TTCTTTACAGGTTTACAGATAACTATTTACACATCTAATTCTCCAGATAAACCAACCTAAGAAGTTGCTGGAAAGCATCGATTGTCCACATCCTCTGACACTTAACGTCATGCTGAAGGGGGTGAAACgtaaaataaataacacacgcAGATgtaacagacacaaacagacagacacacattctTATGGGTTCCATCACAGACATGTAgtctggtctcagatctgtttgcgTGGCCTCTCTATATGCCCTGTGAGGGCAGgaataggagggggggggggggggggtgataaagGACAGAAATAGTTGGTAAGGAAAAGAGATACGACATATAGAAAGAacccagttacacacacacacacacaaggctacATAGAACAAAAGGCACTGCCAGCAGGAACAGCCTGAACATTGagaaggttagggttgggttataagGGGTTGAGGAGGTAAGAGGATGGGATGGACATGGGCATTTCTTTTGGGCTCTCTGCATCAGGAAGGCATGTGCTTTTGGACGATGATAGAGACTCATTGGAATACATCGGTATTAACTCTCATATCATTTTTTAGACTATTTTAGACACACCAATGATAACAATCATTATAACCAATGTTAATAATTTATCCTCCAATGGTtacttacagagccttcagaaagtattgacttttcccacattttgttgtgttacagcctgaatttaaacaagattacatttagattttgcgTCACTGACCAACACCGTATAATTCTGTTTGtagaacattttttaaatgaatacAAAATTAAAAGATGACATgtcttaagtcaataagtattccatTTATTGTGGCACGGGTAAAAATGTGCTTCACGAATCGCACAGTAAGTTGGATAGACTCTGTGTTCAACAATAGTGGTTAATGATTTCTGAATaactgcctcatctctgtaccacacacatacaattatctgtagggTCCCTCAATCGAGTAATGAATGTCAAGcacagattaaaccacaaaggccagggatgtttttcaatgcctcgcaaagaagggcatctattggtagatgggtaaatacaaaataaaaagcaattgctgaatatccctttgagtatggtgaagctgttaattaggctttggatggtgtatcaatacacccagttactacaaagataggcgtccttcctaactcagttgccggagaggaatgaaactgctcagggatttcaccatgaggccaatggagaTGTTAAAACAGTTACGAGTTTAATGGTGGGATATGATCaaagtgaggatggatcaacaacattgtagttactccacaatgctaacctaaaaaacagagtgaaaagaagaaagccggtacagaatacaaatattccaaagcatgcatcctgtttgtagcAAGGCACTAaaaacatgtggcaaagaaattaactttttgtcctgaatacaaagcgctatgtttggggtaaatccaatacaacacatcactgagtatcactcttcatattttcaagcatggtggtggcggcatcatgctatgggtatgcttgtcatcggcaaggccTGGCAGCGTTTTCCAAACTTTGTCCTccggcttgatgattagttggggtcccgaggaccgagtttgggaaaccctgttttaaaaaaaaaaaaaaaaaaatggaatacaGCTACGAGCACAGGAAAAATcgagaggaaaacctgctttctatggtaagacttgaaaatggctgtctagcaatgaatGATCAACGATCaagttgacagagcttgaataattaaaaataataataaatgggcaaatattgtacattccaagggcctcatttatcaatatTGCGTAGAAACTATTCTAAAATACTATTTACAAACTGAATTTAGAATGGTGTATGCATAGAAACGGTGTGATTCATCAAACAATCCTACGAGCATCACATGCACACTGGTAGGAGATAAACCGTTTATAAATACCAATTGTTCTCAGCCTCAGTGCTCTTGCACGACCTTGGTGGTTTGCGTTTCAAAATGCCCCTAAATAAACATAATTAAACAACGTTTAATTAGGGTCATTTTCAAATGCAAACCACATTTCAAAAGCATCACGTTAAATAATGGAATATACAACCCCATACCATGAAATACAACAGCCTAACCAAAAAAggcaaagaagaagaaaaatctCTGAGACTGAAAaagaggtgctagtgtcagagTGAGTACAACCAAAATATTTTATTTGGCTCGCTCAGTTGTGGCTTAaccagtaaacaaacaaaaaaaacatggctACAAAAGAGGACCATTATGACAATTCAAGTTGCTTTAGCAATGGCAAATATACTTAAAATAAGTAGGTAACACTAACCAATAAGCCATCCATCTTCCACAGCTCCCTCGGGCAGGCGTATAGGCCAACATCGCTGTTCTGCAGAATGAACGAGTCGTGCGTTCCTCCTTGCCACCACATTCAGCAGCGTCTTTTGCGCATCATATAACCTGCACATAAAGAGTGGAAGCCTTTTCTGTTCACATAGTTGAAATAGTTTTGGGATGGTAATTTGATGGCAATGTGGGTGCCGTCTATTGCTCCGTTCCTATTCGGGAACCCGTTGTTGGCATCATGGCAAAGAAAGCCCTCTTGACATCAATGTGTTGTGCGATGGTGTATGGAACTTGTATGTGTAGCTAAGTTTTGCTGATGACTTCATCCAAAACATTGGCTCATCAAGGGCTGTGAGATGCCGAACGGCAAGCCCCCACAGCAGAAAAGTACCCGTTGCCAACCACCCTTTTTAAAGGAGGTCTTAAATCCTCTCAAAATTCAATGATATCTGATGAGCCAATCTGTACTTTCTGCGGAAAAGGTCCCACCCGTCTCTACAAAATGCAGCGTGTGCCTAATCTTCAAACCGAGCAGGATCAGCCAACACTCTTTCCATTTTGCATTAGCTCAGGCTTTTATAGCATTTCAACAATGTTCGAAATAGTTTAACAAACGACTGTACTTTATATGGATTATTATCGAAACACGTGTACTGATGCGGTCAAATGATATCGTATGTTGCATAAATCCACAATGGAAATacaatgaaataaaaaaatgatttaattaaTACTCAAATAATGTCACACATTTTCAACGTATATTTTCCCCATTCTACACTCAACAAGCAGTTCCCATATTCCAGCATTTGGCACTGTGCGTAAAGCATGATCATGGTCGTGCATAAATTTATGCACACTCAAGCAAGCGTTCATATTCATAAATCTCACACTGTGTGGAAACGACTCTATGTATGCTTTACACACAGATTTGTGCATCTGCGtgattgataaatgaggccccaagctcttagagacttacccaaaaagactgtcgtcactgccaaagttgcttctacAACGtatgactcaggggtgtgaatatttatgtaaatgaaatatttatgcatttcattttcaatacatttgcaaacatttctaaaaacatgttttctcttTGCCCTTGTGggacattgtgtgtagatggatgagagaaaatattgaatccatttttgaattcgggctgtaacacaacaacatgtggaataagtcaaggggtacgaatactttctgaatgcactgtatgcgtCACACTCAGATCAACATCATTGGTACGATAAAATTCAATTTCTACAAAAGTATCACTAATTTCATGCCTAATTTCATGCCCCTTCTCTAGGATACTACAGACCTGTGGCCAGAATCAGTTTGTTTATTCTACAATAAGTCCTATTTCCAGTCAGATATCCCACTACCTCTggggagagagggacacaggGTTCTCGTCCCTCTTAACTTGGGTGTGATCAACAGAATGGTGTTTCTCAATGAACAATACggacaggagtttttcctgatcacATGAACTGACCAGGAGTACCTCCTCGCGGTATGACCCTTGAACTCCAGTCAGTGTTTAAGCATCAGTTCCTCTCATTCACTCAGTCCCGTAACAGTCGGCTCAGTGGCAGGGCTTCATGGGCCTGTCACAGCAGCACAGAGTGGCTGGCTCTAACAGGCCTCTAACAACAGTAGCTACAGCTGCATACGctctacacagacacagcagCACGGCACGTCTCCCATCAGACGAAATGTCCATTTCCAGGTTAGGAGATAGGGGTCGGGGGTTACTGATGACAGGGTGAACAGTTCACGGAGAATCAGAACATCAACATCCCATTGAGCTGTTTGTAAATGCTTAAAACACCAGCAGACGGTTCAAGCAGTGAAGGAATGCTTACTTGTTTTGATTGTTTACGTTCTGTATGCTTACGTAGAATGGGTTAATGAATAACAGGGTGGATATCTATTGGGTATATAAGGC

Function

NR:

description
putative nuclease HARBI1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU696292 True 4364 lncRNA 0.40 2 44520554 44524972

Neighbor

gene id symbol gene type direction distance location
LOC110527846 LOC106582831 coding downstream 200084 44315503 ~ 44320470 (-)
si:ch211-222l21.1 NA coding downstream 226458 44291263 ~ 44294096 (-)
prxl2b fam213b coding downstream 251249 44261628 ~ 44269305 (-)
LOC110527840 miip coding downstream 336350 44136185 ~ 44184204 (-)
si:dkeyp-61b2.1 LOC106582824 coding downstream 344463 44163371 ~ 44176091 (-)
ghrh LOC106582839 coding upstream 61338 44586310 ~ 44590398 (-)
lbp/bpi-1 lbp/bpi-1 coding upstream 70787 44595759 ~ 44602923 (-)
LOC110527856 LOC106582843 coding upstream 81089 44606061 ~ 44607348 (-)
LOC118965287 LOC106582968 coding upstream 83825 44608797 ~ 44610332 (-)
LOC110527855 LOC106582968 coding upstream 87121 44612093 ~ 44613628 (-)
G611692 LOC100136012 non-coding downstream 2217 44518086 ~ 44518337 (-)
G611583 LOC106582833 non-coding downstream 3245 44515866 ~ 44517309 (-)
G611691 NA non-coding downstream 5511 44514765 ~ 44515043 (-)
G611684 NA non-coding downstream 12994 44507334 ~ 44507560 (-)
G611584 NA non-coding downstream 15635 44503970 ~ 44504919 (-)
G611693 NA non-coding upstream 1045 44526017 ~ 44526720 (-)
G611694 NA non-coding upstream 2108 44527080 ~ 44527281 (-)
G611696 NA non-coding upstream 3959 44528931 ~ 44529229 (-)
G611730 NA non-coding upstream 51265 44576237 ~ 44576497 (-)
G611674 NA other downstream 34802 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 940590 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 983589 43526691 ~ 43537037 (-)
LOC110527812 LOC106582796 other downstream 1081641 43435578 ~ 43439076 (-)
G610185 NA other downstream 1363465 43151570 ~ 43157089 (-)
G613411 LOC106582852 other upstream 1349993 45874965 ~ 45875700 (-)
LOC110527888 LOC106582868 other upstream 2743351 47260325 ~ 47284791 (-)
G616880 NA other upstream 3962075 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 4659452 49184424 ~ 49186096 (-)
G617632 NA other upstream 4670632 49195604 ~ 49195970 (-)

Expression


Co-expression Network