G611768 (LOC106582843)


Basic Information

Item Value
gene id G611768
gene name LOC106582843
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44634346 ~ 44640269 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU696505
TTTCATTTGATGATTTGTGTATTTATTCAGACTGACTCAATGAGTCACATCATTGAATACCTTAATTTAAGGTAAATATTTCAAGAGAAATACAGTGATTAAACATCACAACAAGAACTTGAACAAATCTCCAAGATATGATACTCTATCAGAGTATAGGATACAAAGTTAATGTCtttataaaatacaaaataattgttTCAAATAAACAAGGGTTTTTCAATTAGACATTTCTTTCTCCCATTTGCAAAAAGCACATTATTCAAATAACATGATCAATAATTTCACAAATGAAGTTCGatctttaaacaaatcaaatattgtTAATCACAGAGTGATGATAGCAGGTATAATACCCAGTTTGGGTAAATAATCCTCACGGAGGAACATTGATGCTGTAGCTCAAGTTGATCAATATCAAATATATAACTGATACATGCTTCACAGAAGATGCTCAATACAATGTCAATATGACTATATCACTACACAAATGTAGAGGTAAAAAATTACTCACATTTTCAGACCATAAAAACACATTATTCAATTACAATCACAAACAGATTGATGATATAGCATCCATTTTGGGTTAGAAGTTCTCATAGAGAACCATTAGTTATTGTTCATCATGAATATAAAAACAAGATTAATGTAATCAACACGTTTCACAAAACATGAACTTATTTCAATTATCGATTTGATCATTTTCTCAGAGAACGTTAACTTCTTCAGTACAACTTTAATTAAACGTCTCACAGCAAGACTTAAAAAACTCCTGCATAAGCAGAAGATGAAGAATCTATTTTATTATACTCATTACTGTCCATGAAATTAATCTTAGACCAACATGGTCCATCTGTTGTGTTTGTCTGAGTGGAGCTCCAATCTGTAGGTCTCTACCAAGGCCTCCAGGGGGCGATGTTGACTGGACTCTTGTCTTTGCTGATGCTGTGCTGGGCTGGGGAGCTCAGCTGAGGACGGTCAATCTTCCTCTTGTTCTCATCAGAGGATGGCTGCAGGCTCTGGAAGTGGCTCAGCAGTCTTCTCTGGGACTGTGACTTCTGCTCACATTTAGAAAGGAAGTGAACAATCTCTTGGACACACCTGGAGTAACCCTGATTGACAGGTGCTGAGCAGGAAGAGGAGCTCACTGGCTGGTTCTGTTTCTGTTGTCTCAGGAAGCAAACTGTCATCTCCAGGATGTCGGCTTTGTCCAGCTTAGAGTCGGACTGCTGGTTGAGGATCTCTGGAACCAGGAGAGACTTGAGTTGCTCAATGCTGTTGTTGATACGATCTCTGCGTAACTTCTCCACCACTGGCTTTCTTATCTGCAAGAAGAGATGAGTCATCAAAACCTTGTTCTGTAATATGGCATTACTGAAGCAAATAAACAATCAATCAATACAATTGAATGAATGTCACTGAATTTGAATCTTCAATTTACCTTTTTTGTCAGAGTCAGGTGCTCCTTAGAGTAGATCATAGTTGAAGTGATTGTAGGTACCATAGCTGGATCTCTGTGCTGTAGAGGTCTGTGTAGAGAGAATCTGATCTCTATTGGCTTCATCTCTCCTATATATTGTCCCAAATCTGCATATGAATGTGTGGGTCTTGGGCTTGTTGGAGTTTCTCACAGTCTGTAGCCAATGGGAGAGCTTGGGAGAACAGTGAGGAGTGTGGAGCTGCCACATGCTCAGTGTTCTTATTGCTGGGGGACAATGGTCACGTCTCAGGGGACTaggtggagg
>TU696501
TTTCATTTGATGATTTGTGTATTTATTCAGACTGACTCAATGAGTCACATCATTGAATACCTTAATTTAAGGTAAATATTTCAAGAGAAATACAGTGATTAAACATCACAACAAGAACTTGAACAAATCTCCAAGATATGATACTCTATCAGAGTATAGGATACAAAGTTAATGTCtttataaaatacaaaataattgttTCAAATAAACAAGGGTTTTTCAATTAGACATTTCTTTCTCCCATTTGCAAAAAGCACATTATTCAAATAACATGATCAATAATTTCACAAATGAAGTTCGatctttaaacaaatcaaatattgtTAATCACAGAGTGATGATAGCAGGTATAATACCCAGTTTGGGTAAATAATCCTCACGGAGGAACATTGATGCTGTAGCTCAAGTTGATCAATATCAAATATATAACTGATACATGCTTCACAGAAGATGCTCAATACAATGTCAATATGACTATATCACTACACAAATGTAGTGGTAAAAAATTACTCACATTTTCAGACCATAACAACAGATTCATCAAATACAATCACACACAGATTGATGATATTGCATCCATTTTGGGTTAGAAGTTCACATAGAGAACCATTAGTTATTGTTCATCATGAATATAAACACATGATCAATATAATCTACATGTTTCACAAAACATAAAGGTTATGATGATTTCAATTAACACTACAAAAATGTAGTTTTCATCGATCAGATTATTTTCTTGGAAAAATGTTTTAACTTCAGTTCAACTGAAATGAAATGTCTCAATCACAACAAGACTTTTAAAAACTCCTGCTTAAGCAGAAAACAATGAATATATTTTATTATACTCATTAATGTCCATGAAATTAATCTTAGACCAACATGGTCCATCCATTGTGTTTGTCTGAGTGGAGCTCCAATCTATAGGTCTCTACCAAGGCCTCCAGGGGGCGATGTTGACTGGACTCTTGTCTTTGCTGATGCTGTGCTGGGCTGGGGAGCTCAGCTGAGGACGGTCAATCTTCCTCTTGTTCTCATCAGAGGATGGCTGCAGGCTCTGGAAGTGGCTCAGCAGTCTTCTCTGGGACTGTGACTTCTGCTCACATTTAGAAAGGAAGTGAACAATCTCTTGGACACACCTGGAGTAACCCTGATTGACAGGTGCTGAGCAGGAAGAGGAGCTCACTGGCTGGTTCTGTTTCTGTTGTCTCAGGAAGCAAACTGTCATCTCCAGGATGTCGGCTTTGTCCAGCTTAGAGTCGGACTGCTGGTTGAGGATCTCTGGAACCAGGAGAGACTTGAGTTGCTCAATGCTGTTGTTGATACGATCTCTGCG
>TU696503
TTTCATTTGATGATTTGTGTATTTATTCAGACTGACTCAATGAGTCACATCATTGAATACCTTAATTTAAGGTAAATATTTCAACAGAAATACAGTGATTAAACATCACAACAAGAACTTGAACAAATCTCCAAGATATGATACTCTATTAGAGTACAGGATACAAAGTTACTTTCTTTATGAAAGACAAAATAATTGTTTAAAATAATCGTATTTGTCAAGTAGACATTATTTTAATCACATTTGCAATAAACACATTATTCAAATAACATGATCGATAATTTCACAAAGAAGTTCGatctttaaacaaatcaaatattgtTAATCACAGAGTGATGATAGCAGGTATAATACCCAGTTTGGGTAAATAATCCTCACGGAGGAACATTGATGCTGTAGCTCAAGTTGATCAATATCAAATATATAACTGATACATGCTTCACAGAAGATGCTCAATACAATGTCAATATGACTATATCACTACACAAATGTAGTGGTAAAAAATTACTCACATTTTCAGACCATAACAACAGATTCATCAAATACAATCACACACAGATTGATGATATTGCATCCATTTTGGGTTAGAAGTTCACATAGAGAACCATTAGTTATTGTTCATCATGAATATAAACACATGATCAATATAATCTACATGTTTCACAAAACATAAAGGTTATGATGATTTCAATTAACACTACAAAAATGTAGTTTTCATCGATCAGATTATTTTCTTGGAAAAATGTTTTAACTTCAGTTCAACTGAAATGAAATGTCTCAATCACAACAAGACTTTTAAAAACTCCTGCTTAAGCAGAAAACAATGAATATATTTTATTATACTCATTAATGTCCATGAAATTAATCTTAGACCAACATGGTCCATCCATTGTGTTTGTCTGAGTGGAGCTCCAATCTATAGGTCTCTACCAAGGCCTCCAGGGGGCGATGTTGACTGGACTCTTGTCTTTGCTGATGCTGTGCTGGGCTGGGGAGCTCAGCTGAGGACGGTCAATCTTCCTCTTGTTCTCATCAGAGGATGGCTGCAGGCTCTGGAAGTGGCTCAGCAGTCTTCTCTGGGACTGTGACTTCTGCTCACATTTAGAAAGGAAGTGAACAATCTCTTGGACACACCTGGAGTAACCCTGATTGACAGGTGCTGAGCAGGAAGAGGAGCTCACTGGCTGGTTCTGTTTCTGTTGTCTCAGGAAGCAAACTGTCATCTCCAGGATGTCGGCTTTGTCCAGCTTAGAGTCGGACTGCTGGTTGAGGATCTCTGGAACCAGGAGAGACTTGAGTTGCTCAATGCTGTTGTTGATACGATCTCTGCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU696505 False 1745 lncRNA 0.39 2 44634346 44640269
TU696501 False 1333 lncRNA 0.36 2 44634793 44640269
TU696503 True 1331 lncRNA 0.36 2 44634793 44640269

Neighbor

gene id symbol gene type direction distance location
LOC110527858 LOC106582773 coding downstream 4634 44627888 ~ 44629712 (-)
LOC110527861 LOC106582773 coding downstream 9665 44623094 ~ 44624681 (-)
LOC110527855 LOC106582968 coding downstream 20718 44612093 ~ 44613628 (-)
LOC118965287 LOC106582968 coding downstream 24014 44608797 ~ 44610332 (-)
LOC110527856 LOC106582843 coding downstream 27014 44606061 ~ 44607348 (-)
LOC118936679 LOC106607655 coding upstream 17190 44657459 ~ 44658756 (-)
cntn4 LOC106582845 coding upstream 162740 44803009 ~ 44981651 (-)
LOC110527866 LOC106582846 coding upstream 445251 45085520 ~ 45171406 (-)
chl1b LOC100380675 coding upstream 596604 45236873 ~ 45312977 (-)
ppp4r2b LOC106582851 coding upstream 1085043 45725312 ~ 45731514 (-)
G611767 NA non-coding downstream 356 44633782 ~ 44633990 (-)
G611730 NA non-coding downstream 57849 44576237 ~ 44576497 (-)
G611696 NA non-coding downstream 105117 44528931 ~ 44529229 (-)
G611694 NA non-coding downstream 107065 44527080 ~ 44527281 (-)
G611955 NA non-coding upstream 141714 44781983 ~ 44782270 (-)
G611970 NA non-coding upstream 154193 44794462 ~ 44794673 (-)
G611980 NA non-coding upstream 159896 44800165 ~ 44800483 (-)
G611674 NA other downstream 148594 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 1054382 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 1097381 43526691 ~ 43537037 (-)
LOC110527812 LOC106582796 other downstream 1195433 43435578 ~ 43439076 (-)
G610185 NA other downstream 1477257 43151570 ~ 43157089 (-)
G613411 LOC106582852 other upstream 1234696 45874965 ~ 45875700 (-)
LOC110527888 LOC106582868 other upstream 2628054 47260325 ~ 47284791 (-)
G616880 NA other upstream 3846778 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 4544155 49184424 ~ 49186096 (-)
G617632 NA other upstream 4555335 49195604 ~ 49195970 (-)

Expression


Co-expression Network