XLOC_025396 (arhgdig)


Basic Information

Item Value
gene id XLOC_025396
gene name arhgdig
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 27713610 ~ 27769232 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050101
GGTATACACAAGAAGTGATCACTCTTGAACATCCGCATCTACTGCTCTGCAAGACGAGACGAGACGAGACGGCATAATGGCTGATAAAGAGAAGGACGTGCCAGTGGTTGAGGATGAAGATGAGCCAGATCTGAACTACCAGCCTCCAGCACAGAAGAGCCTTCAGGAGATCCAGGAAATGGACAAGGATGACGAAAGCCTGACTAAGTACAAGCAAACCCTCCTGGGCTCAGGACCTGTGGTGGCAGATCCCACCATTCCTAATGTTCAGGTGACCCGGCTGACTCTGATGTGTGACCAGGCCCCTGGACCCATCACTATGGATCTGACAGGTGACCTCAATGCTCTGAAGAAGAAGTGCTTCACCATGAAGGAGGGAGTCGAATACAGGGTGAAAATCCACTTCAAGGTCAACAGGGACATCGTGTCTGGACTGAAATATGTGCATCAGACCTACAAGAAAGGACTCAGATTGGATAAGGCGGTCTATATGGTAGGCAGCTACGGTCCGAGAGCCGAGGAGCATGAGTTTATGACCCCTGTGGAGGAGGCCCCAAAAGGCATGATTGTCCGGGGAACCTACCATATCAAATCCTTCTTCACAGACGACGACAAGACAGACCACCTGTCATGGGATTGGAACCTGCTGATCAAAAAAGACTGGGACGGCCCAGAGGAAAGACCCTTCTAAGTCTCTCCCAGATCTACAGTGACACCACTGATGTTTCAAACAGACTTAGGCTAGCTAGATGTGCAGCTGGAGTCGGCTTTGCTTATGGTTATATAATTagtcaaatatatattaaaaaatggaaaaaaaaataaagatattcttACATATTAGTTGTAATCAACATTGAGGACATACTGTACAGTGACTGGCAGGGTATTAGAGGCGACTtagtacttaaagggatagttcaccccaaaaactgaaaaacatctgtcattatttactcaccttcctTTTGTATCAGAGTTCTGATGAACTCGAAAGAAGTTATTTGGAAATatgttggaaacctgttaccattgacttccagtagaaaacacaaatactattgaagtcaatggttacccatttccaacattctttaaaatatcttctttcatgttcaacagaagaaaaaagaaactcataaaggtttggaattacttgagggtgagtaaattttctaTTTTTGGGAGTCAACTGTCCCTTCGATAACCAACAAATGAAATTCCTCCTGCCTGTACGCTCAGGTTGGTgtatactgtaaatgtaaatatcacTGTGTATGTATTCTTGCGATGCATTTTGAGTTCATCAAGAGTCAGatcagtgcatgtgtgaatgtgaagcCATCGTGTCCGCATTGGCTCGTTTCTTTTATTGATGACGTAATCAGCCTGCTGTTTCCTGAGTAATTCATGTGTTGGACGTGGTTTGTACTAAGTGTTGCTTGTCCATTAGGTATTTCTTAACATTAAACCCATTCGAAAAAGACCAGCTAATACTAGCGGCTGTTTATAAGCTGCTCAAGCAGCATTTTTCACTAACTTGCTGATAacagatttgtaaaaaaaaataaataaataaaaatctggtgATCTGCTGGTCTTTTCAGCTGGAAAGCCCATAGTCAAGCACCCTTGTCATTCCTTGAAAGAGTTTAAAgcgatagtttacccaaaaatgaaaatctaatgGTTTGCTCAACCCATTTTGGGTTTAATCACCCAAAATGTGATTATTTTCCCATCAGTAggactttaaagggacagttcacccagaacTGAATATTTACTCATTGTTTACATCCAACAAACTCATTTGAGTtccctttttctgttaaacacaaaataagatactttaaaaaatgttggaaatatttgtttttttattatgtaagtcaatagttaccagttttaacattctttaaaatatatatttttgtgttaaaaagtaaaagagaaacttaaacaggttaaGAACTACTTGACTGAGActaaacaataacaatacattttcaatttgtgtgaactatccatttaaagaagatttttagcttgAAACGATGCCCCTCAGTGAGTCTAAATGCAACTTAATGGCTACTGGTACTTTGAGAGTAAATTTAAACATATAccgtcaaaacaaaatgaatacatgTGGCTCTTGTCAGTACATTGAAGTTAAATGAGGCACAACAATCCGTTAATGCAAGAAACTGAGCactatttacaacattattaccctTTTGCGCTAAGCATGTCGACAACAGAGCGCAAGCATGCGGTGagttaattgtcatttttgggagaactttGCCTTTAAGATCTGTCCAGGTGTCTGTAACTGTCTTCCGTGTTTCTCCATCTAGATCTGATTTTAGATTGTCTTAGATATTTTTCATTTGTCAttccaaaataaatacattttattgtttatgtGCCCGCTGATGCTTGTTTCCTGACACTTCCATCTCCATCACTCATGTTTTATCTCACACGTTCATATTATCTTGGTTTCTTTTGAATGGATCTTTACTTTGCTATCATATTCAGGAATATTAGACAATGTTTCAGAGTTCCATTGAAAATTTTTTAACTTGCATGTGAAATGCCTTTCTGAGAGTGCAAATGCTAAGTTAGCTAGTTAAGCTATGAGCTAGTTAGCAATAGGCAAACAAACAAGAGAGAGCACACAAAAGACTAGCTGAGAGCTTTTTTTGTGTATTGTCATTTTTGATAACTGTGTGACTCCATGGTCAAAATATGATTGTATGATGTATTTGACGAAATCCCACATCACATATGATGTATATTTTCTCAAATTCATGTTGTCTGTTTTCATAAATGGATGCTATCATTAGTGAAGTCTGTAGCTATTGCATGGTGGTAGAAATGTTATTTGGGGGGTTTCATTTTGGATGTAATGGACACTGCAGTAAGCAGTAATGTGAGATTtagtcagttttttttcttattcgtTTGCTTAAAAAATATTCTATCGCTTCTGAAGTGTCAAACCTTTTCatcttgtatttttaataaagtttggCCTGTC
>TCONS_00050102
ACTCCCTTACTTTCTTTCTCCATCTCTcacgttcgctctctctctctctcactcgctcACTCTCTCTTTAGCCAACCCACACCCAGTGAGTCggtatcttgttttattttgtggcAGTAGGAGAGATGATGCTGCTGTGAAATTTATATACATTGAATGAATTTCAGAGATTCCACAAGAAGAGTactttcttgatttttttaaagtgggATTTTGTGGAAAAGAGCTTACTCATAATGTTGGGCTTGGATGTTTGTGAATTTGGCGGACAGTTTCTTGAACTGCTCTGGTTGACAGTTTGCTACAGAGGCATAATGGCTGATAAAGAGAAGGACGTGCCAGTGGTTGAGGATGAAGATGAGCCAGATCTGAACTACCAGCCTCCAGCACAGAAGAGCCTTCAGGAGATCCAGGAAATGGACAAGGATGACGAAAGCCTGACTAAGTACAAGCAAACCCTCCTGGGCTCAGGACCTGTGGTGGCAGATCCCACCATTCCTAATGTTCAGGTGACCCGGCTGACTCTGATGTGTGACCAGGCCCCTGGACCCATCACTATGGATCTGACAGGTGACCTCAATGCTCTGAAGAAGAAGTGCTTCACCATGAAGGAGGGAGTCGAATACAGGGTGAAAATCCACTTCAAGGTCAACAGGGACATCGTGTCTGGACTGAAATATGTGCATCAGACCTACA

Function

symbol description
arhgdig Predicted to enable Rho GDP-dissociation inhibitor activity. Predicted to be involved in Rho protein signal transduction. Predicted to be located in cytoplasm. Predicted to be active in cytosol and membrane. Orthologous to human ARHGDIG (Rho GDP dissociation inhibitor gamma).

GO:

id name namespace
GO:0007266 Rho protein signal transduction biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005094 Rho GDP-dissociation inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1493 Predicted to enable Rho GDP-dissociation inhibitor activity. Predicted to be involved in Rho protein signal transduction. Predicted to be located in cytoplasm. Predicted to be active in cytosol and membrane. Orthologous to human ARHGDIG (Rho GDP dissociation inhibitor gamma).

Ensembl:

ensembl_id ENSDARG00000004034

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050101 False 3046 mRNA 0.38 6 27713610 27769232
TCONS_00050102 True 696 mRNA 0.47 5 27722355 27764102

Neighbor

gene id symbol gene type direction distance location
XLOC_025395 clcn7 coding upstream 4298 27664864 ~ 27709312 (+)
XLOC_025394 usp7 coding upstream 50163 27606505 ~ 27663447 (+)
XLOC_025393 NA coding upstream 112137 27594373 ~ 27601473 (+)
XLOC_025391 NA coding upstream 218805 27346839 ~ 27494805 (+)
XLOC_025392 BX000529.1 coding upstream 306399 27407096 ~ 27407211 (+)
XLOC_025397 eci1 coding downstream 878 27770110 ~ 27777671 (+)
XLOC_025398 nat15 coding downstream 17369 27786601 ~ 27796351 (+)
XLOC_025399 carhsp1 coding downstream 28862 27798094 ~ 27831815 (+)
XLOC_025400 TMEM114 coding downstream 160273 27929505 ~ 27952302 (+)
XLOC_025401 sept12 coding downstream 733187 28502419 ~ 28627447 (+)
XLOC_025429 BX649540.1 misc downstream 2479507 30248739 ~ 30249036 (+)
XLOC_025390 NA non-coding upstream 369921 27294308 ~ 27343689 (+)
XLOC_025384 NA non-coding upstream 1077212 26635820 ~ 26636398 (+)
XLOC_025402 NA non-coding downstream 880715 28649947 ~ 28733765 (+)
XLOC_025403 NA non-coding downstream 996461 28765693 ~ 28783757 (+)
XLOC_025406 NA non-coding downstream 1129897 28899129 ~ 28926075 (+)
XLOC_025410 BX005369.1 non-coding downstream 1397788 29167020 ~ 29167147 (+)
XLOC_025411 NA non-coding downstream 1624233 29393465 ~ 29398151 (+)

Expression


Co-expression Network