G612472


Basic Information

Item Value
gene id G612472
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 45179274 ~ 45179957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU697255
gtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgaatccaaatccggctttacatttattcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggatctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtgaattgtatttatcatcattagtcatttaggtcaacattggatcattcagaggtcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacacccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgttccacttgttgttgattcttcacaaaaaaataaagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaaggggccgaatactttcgcaaggcactgtacattaacaAGCTGATTCGAGTAAAAACAAGTCTCAAATAGGAAAATGGCTATACATTTCAGCTGTTTCAAAAACATTGCTC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU697255 True 684 lncRNA 0.39 1 45179274 45179957

Neighbor

gene id symbol gene type direction distance location
LOC118965289 NA coding upstream 300374 44870194 ~ 44878900 (+)
LOC110527864 LOC106582844 coding upstream 401179 44669786 ~ 44778095 (+)
LOC118965288 NA coding upstream 483972 44693791 ~ 44695302 (+)
LOC110527115 LOC106582773 coding upstream 539005 44638690 ~ 44640269 (+)
LOC110527859 LOC106582773 coding upstream 543147 44634512 ~ 44636127 (+)
LOC118965290 NA coding downstream 175584 45355541 ~ 45387473 (+)
cntn3b LOC106582848 coding downstream 239191 45419148 ~ 45489247 (+)
pdzrn3b LOC106582849 coding downstream 401876 45581833 ~ 45705499 (+)
shq1 shq1 coding downstream 588741 45768698 ~ 45809619 (+)
LOC110527873 LOC106582852 coding downstream 663206 45843163 ~ 45883401 (+)
G612337 NA non-coding upstream 98846 45080141 ~ 45080428 (+)
G612310 NA non-coding upstream 122447 45056606 ~ 45056827 (+)
G612303 NA non-coding upstream 130588 45048448 ~ 45048686 (+)
G612294 NA non-coding upstream 137048 45041936 ~ 45042226 (+)
G612292 NA non-coding upstream 137533 45041476 ~ 45041741 (+)
G612479 NA non-coding downstream 3955 45183912 ~ 45184116 (+)
G612493 NA non-coding downstream 11842 45191799 ~ 45191999 (+)
G612511 NA non-coding downstream 26636 45206593 ~ 45207194 (+)
G612521 NA non-coding downstream 53042 45232999 ~ 45233421 (+)
G612531 NA non-coding downstream 53533 45233490 ~ 45233764 (+)
si:dkey-264d12.5 LOC106582817 other upstream 1151046 44002556 ~ 44035143 (+)
G610622 NA other upstream 1347394 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 1594378 43584020 ~ 43584896 (+)
G610436 NA other upstream 1768468 43410391 ~ 43410806 (+)
G609436 NA other upstream 2358029 42820956 ~ 42821245 (+)
G613664 NA other downstream 1098777 46278734 ~ 46279333 (+)
LOC110528958 NA other downstream 1452165 46629591 ~ 46638492 (+)
G615624 NA other downstream 2659431 47839388 ~ 47839722 (+)
G617133 NA other downstream 3646870 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 4392363 49571790 ~ 49620194 (+)

Expression


Co-expression Network