G612891


Basic Information

Item Value
gene id G612891
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 45485492 ~ 45489186 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU697696
AAAACAATGATTCACATGCACAATTTTAGTATACAAGACAAAACAGTTAGTTTTCAATATGAAAACGCAGTTCTATAGGTCAGTTATCTCATGGAGATCATGGGTTAAATATCAGTATTAAAATCAAGGGCCACAAGTTGTATAAAATATCAGTAGGTTGTCTTTGTAGGCcagctttaaaaatatatatgcaaGCTATTTACATTAGACCAAGTACATTTGTCAGAACTAAAGCGAATATTTGAGTAACCATAATCAGTGTTTATCATATCAAGTTGAATCCTTTAAAATCAAACTCAGTTGACCTGATGGCTAACATAACGGTCTTAGATTGCATTTAGAATTAATTAACAAAGTACAAGGCCAGAAAAGGTACAGCATTTCCCCCTCTATTTTACAGTCAGCAAGGAACAAGTACTTAGAACTATAGCTACGTAGATTATAGGATAGTCTGGCCAAGTTTGATAAAGGACTCATTTGTAAATCCACATACTCTAGCACTGTGTGAGGGATGTGTACTGGTAAGTATACACTATTCTACTAACCAGCATACAGAAATAATGATCAGGTGATGGGTACAGGAATGAGGATAAGGTCTACGAGTTACACTATTTGTATTATACACTGTGTTACAAGGTTTTATCCTTGAAATGAACTGACATTGCACTGTACTTTTTTTTATAGTAGTATTATTACACAGGCTTAATCCACAGACAGTTTGACACCTAAAAAGCCTATTGTTCATCATTTGGAGAAAAAGCAAAGGCTATCACTGCTATATCAATGCAAATCTTCAGCGTAGGATGGACGTTTTTTTCAAAAAAAGGGCTGAAGAGTCAAAAAGACAAAGGAAAATGACTAGCTCCCTTTCTTAACCAACACATTACCTTTAAACCTGGAATCCGTAATGATGAAACTGCCATGTCCATTTGCGATATAACGACAACAAAGTTACTTCAAACAACGAACACCGTTTTCTCATTGCACCTCATTGCACGCACAATAGAACAGCAGAGTATGTGTTTCGATATTTTTTACTACAATGCTGGATGCTCCTCTCCTCcgtttcaaaaacaaaacaataacaaatgtgcCGGGGGCGAACAGGGGTGCTGTTTTCCCTTATGCGGATTTCAGCTTAAAAGAGGAACAAAATGCTGTTCATTTTCATATGAAAGTCAGTAAGATCACTTATGAACGTGGAGCCGTTTGAATCCGTTAAAAGTTCTTAGTAGGGGGATGTTACCTAAAACACCAGTTTCTCATAGCAgctcttatttaaaaaaaaaacatgtactgtatattacattGTGTTCTTATGATTTTAACTTTGAGTGAGGAAGGACATCTGTCAACATCTCCAACTGTACCCAACAAAAACATGCGCAACAGGAAGCCTCGGCATCAGTCAATCAAGCATCTGAATTGTGACAGCTGCAATAACGGGGCAGGAAAATCAATATCCTATTGACTGGGCTGCAGCAGTCTAATCAAAGAGCACAGGCCTTTATGAAACCACTGAAGGAGCAGATAGGCTGATTGTGTCCGCTGCTTGGGCTTTACGGGCCTCTAGGGACTGCACACCTGTTCTGGTGGCTGAGCAgggacacagtcacacagtcacctTGGATCAGTTCCTTGTGCTTTCATTCGACTTTGGGAAATGAGTGCAAACGCAGACGACGGGGACAGTCTCACAACAATGTAATCATAGCTCAGCCAGCCCTAATCAGTCCCAAGTTCAGTGAAGGCACGGTTCTTTATAGCAGTAGTCGAGTGTTTACTGCAAGTCCAAACTTACACCAGTGGCCCTAGAATGATGACTTATGATGGAGGACCCATCAGACAACAACATGAACAGGAACCAGTTTCTCACTCAACATCAGGCTAATCGAAGTACTTTAGCAGTTACTGTGTCTAGTCTAGCAGCTCAGGATGTACTTCATTGTGTGCAGAGAGGGACATTATGACAGCAGCCAACCTTTTTCCTCTATTTCCAGTCAAAGCTCCTTTAACGTTACATCATTTATTTAGAGGCTTTAATAGCTGCTAAATTGTGCTGCAGATCCAATCATAGATGTATTATTCACAGGATCTCACCAGACCATAAACGTAGACCAAACCTCCACACTACATACAGTCGGATCCATCTCTACTCCTATAAAGTTTTCAACCCATTGTTATATCAGGTGTTCCAGTATATAATTAAAATTGGAATCATCAACCCATTTCCATTAATGGGGTTTCACATTCACCCCACTCAGTTACTTCGTTTCTATCCGTCTGATAATTCATTTCCAAAAAACTGATCCAGAAAGAATGGGTATGTCCCTCAATTTGTAATATGAAAGATATGCATGTGCAGTGAAGGCACTAATATGTCCTGTACTCAAACATGTATactttatatatattttgcaGACCGGTGATCTGAATTCTGGATAATCGGTAAGACTTATTTAGCATTTAGAGGTCATTTGAATGCAGAATATTACAAGTGGCAACACCACATGATTCTATTCCTTCTGGGACTTTAACATTTCACCGAATTCATTGTGATTTGCATCAATTATTTAGAGGAGCTTGAGATACAGACCAAAATGCCAAGTCCCATCAGCTTGTTGTAGAGAGGAGGTCTAAAGCTCAATAGCCAACAGCTCTATAAGATGCCTAATACTATTTCACTATGCAGAGATGAGTGGGCTAGAGGCACAAGTAATCGATCTAGTATCCAGCCCTGGTCCTGATGAGTTAACAAAGCTCAAAACACAAAACATACAAGGTAAGGTTCTAGCTGCAGTTAGAAAAAtcacttgaTAGAATATTTTTTGATTCGGTTCACCAAGTAAAACTGGTTTTATATGCTATAGTAGCCAATTTACAATAAGTCTGGGCATGTTGTCAGCTGCACAACTTAgttagtatatatttttttaccttttgaAGTTCTACTTCTTCAACTTCTTATAATAATAATCCAAAATGCCATCTACAGTTAGCTACTATATCAAAGGCCATCTGACCCATATAAACCAAAACACATCTCTCCATTGAGCAGCTAACCCTACAATTACAAATGTATGTGAACATACTGTACCTCCACCTGGTAAAAACCATTTTTTAAAACCTCAGATTACCTCTGAAAGACCAATAAATGAATGAAATAAAGACAATGAAACCTTTTTTTTCGTCAACTACTTTGGTATCTACATGGATTTAAGGCATTAGTATTCTTCAAGGATCAGTATCAAACATATAGAATGTAGACATCACTACTCCCAAATTGAAGTATATTCCATTGGCAAAAACAAAATAACACTTCCAAAATGTTTTTACAGCATGACGGCACTTATGACATGAGAGGAAATACTGTAAAATATAATGCACACAAATTCACGTTCTCTATCGGTCCGTTATTGAAATCCTCAATGCATGGCCCTTTTAAAAATCCTGTTCTGTCCAGCACTGCCACAGAGAGTTTTCACCCGTTGCCCCTTCCGACTGAGGGTGAATGCAGGAGCAGCCTcctagaggagagggagagagaggaggatcgGTAGGAGGGCtgtgaccagacatcaccagGAGGAGCTGAGGAGGATGAGAGCACTGACGAGGACTGCAGAGAGATGAGACGGCGACAGCAGACTAAGCCGAGACGCTCCCGAGCCC
>TU697697
AAAACAATGATTCACATGCACAATTTTAGTATACAAGACAAAACAGTTAGTTTTCAATATGAAAACGCAGTTCTATAGGTCAGTTATCTCATGGAGATCATGGGTTAAATATCAGTATTAAAATCAAGGGCCACAAGTTGTATAAAATATCAGTAGGTTGTCTTTGTAGGCcagctttaaaaatatatatgcaaGCTATTTACATTAGACCAAGTACATTTGTCAGAACTAAAGCGAATATTTGAGTAACCATAATCAGTGTTTATCATATCAAGTTGAATCCTTTAAAATCAAACTCAGTTGACCTGATGGCTAACATAACGGTCTTAGATTGCATTTAGAATTAATTAACAAAGTACAAGGCCAGAAAAGGTACAGCATTTCCCCCTCTATTTTACAGTCAGCAAGGAACAAGTACTTAGAACTATAGCTACGTAGATTATAGGATAGTCTGGCCAAGTTTGATAAAGGACTCATTTGTAAATCCACATACTCTAGCACTGTGTGAGGGATGTGTACTGGTAAGTATACACTATTCTACTAACCAGCATACAGAAATAATGATCAGGTGATGGGTACAGGAATGAGGATAAGGTCTACGAGTTACACTATTTGTATTATACACTGTGTTACAAGGTTTTATCCTTGAAATGAACTGACATTGCACTGTACTTTTTTTTATAGTAGTATTATTACACAGGCTTAATCCACAGACAGTTTGACACCTAAAAAGCCTATTGTTCATCATTTGGAGAAAAAGCAAAGGCTATCACTGCTATATCAATGCAAATCTTCAGCGTAGGATGGACGTTTTTTTCAAAAAAAGGGCTGAAGAGTCAAAAAGACAAAGGAAAATGACTAGCTCCCTTTCTTAACCAACACATTACCTTTAAACCTGGAATCCGTAATGATGAAACTGCCATGTCCATTTGCGATATAACGACAACAAAGTTACTTCAAACAACGAACACCGTTTTCTCATTGCACCTCATTGCACGCACAATAGAACAGCAGAGTATGTGTTTCGATATTTTTTACTACAATGCTGGATGCTCCTCTCCTCcgtttcaaaaacaaaacaataacaaatgtgcCGGGGGCGAACAGGGGTGCTGTTTTCCCTTATGCGGATTTCAGCTTAAAAGAGGAACAAAATGCTGTTCATTTTCATATGAAAGTCAGTAAGATCACTTATGAACGTGGAGCCGTTTGAATCCGTTAAAAGTTCTTAGTAGGGGGATGTTACCTAAAACACCAGTTTCTCATAGCAgctcttatttaaaaaaaaaacatgtactgtatattacattGTGTTCTTATGATTTTAACTTTGAGTGAGGAAGGACATCTGTCAACATCTCCAACTGTACCCAACAAAAACATGCGCAACAGGAAGCCTCGGCATCAGTCAATCAAGCATCTGAATTGTGACAGCTGCAATAACGGGGCAGGAAAATCAATATCCTATTGACTGGGCTGCAGCAGTCTAATCAAAGAGCACAGGCCTTTATGAAACCACTGAAGGAGCAGATAGGCTGATTGTGTCCGCTGCTTGGGCTTTACGGGCCTCTAGGGACTGCACACCTGTTCTGGTGGCTGAGCAgggacacagtcacacagtcacctTGGATCAGTTCCTTGTGCTTTCATTCGACTTTGGGAAATGAGTGCAAACGCAGACGACGGGGACAGTCTCACAACAATGTAATCATAGCTCAGCCAGCCCTAATCAGTCCCAAGTTCAGTGAAGGCACGGTTCTTTATAGCAGTAGTCGAGTGTTTACAATAAGTCTGGGCATGTTGTCAGCTGCACAACTTAgttagtatatatttttttaccttttgaAGTTCTACTTCTTCAACTTCTTATAATAATAATCCAAAATGCCATCTACAGTTAGCTACTATATCAAAGGCCATCTGACCCATATAAACCAAAACACATCTCTCCATTGAGCAGCTAACCCTACAATTACAAATGTATGTGAACATACTGTACCTCCACCTGGTAAAAACCATTTTTTAAAACCTCAGATTACCTCTGAAAGACCAATAAATGAATGAAATAAAGACAATGAAACCTTTTTTTTCGTCAACTACTTTGGTATCTACATGGATTTAAGGCATTAGTATTCTTCAAGGATCAGTATCAAACATATAGAATGTAGACATCACTACTCCCAAATTGAAGTATATTCCATTGGCAAAAACAAAATAACACTTCCAAAATGTTTTTACAGCATGACGGCACTTATGACATGAGAGGAAATACTGTAAAATATAATGCACACAAATTCACGTTCTCTATCGGTCCGTTATTGAAATCCTCAATGCATGGCCCTTTTAAAAATCCTGTTCTGTCCAGCACTGCCACAGAGAGTTTTCACCCGTTGCCCCTTCCGACTGAGGGTGAATGCAGGAGCAGCCTcctagaggagagggagagagaggaggatcgGTAGGAGGGCtgtgaccagacatcaccagGAGGAGCTGAGGAGGATGAGAGCACTGACGAGGACTGCAGAGAGATGAGACGGCGACAGCAGACTAAGCCGAGACGCTCCCGAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU697696 False 3672 lncRNA 0.39 2 45485492 45489186
TU697697 True 2574 lncRNA 0.40 2 45485492 45489186

Neighbor

gene id symbol gene type direction distance location
chl1b LOC100380675 coding downstream 172515 45236873 ~ 45312977 (-)
LOC110527866 LOC106582846 coding downstream 314086 45085520 ~ 45171406 (-)
cntn4 LOC106582845 coding downstream 503841 44803009 ~ 44981651 (-)
LOC118936679 LOC106607655 coding downstream 826736 44657459 ~ 44658756 (-)
LOC110527858 LOC106582773 coding downstream 855780 44627888 ~ 44629712 (-)
ppp4r2b LOC106582851 coding upstream 236126 45725312 ~ 45731514 (-)
LOC110527871 LOC106582850 coding upstream 245171 45734357 ~ 45750837 (-)
gpr27 LOC106582853 coding upstream 480244 45969430 ~ 45972012 (-)
LOC110528957 LOC106565741 coding upstream 828343 46317529 ~ 46333627 (-)
LOC110527878 LOC106582858 coding upstream 852802 46341988 ~ 46374962 (-)
G612743 NA non-coding downstream 88995 45396039 ~ 45396497 (-)
G612731 NA non-coding downstream 96106 45389122 ~ 45389386 (-)
G612716 NA non-coding downstream 119309 45363598 ~ 45366183 (-)
G612666 NA non-coding downstream 143913 45341270 ~ 45341579 (-)
G612638 NA non-coding downstream 165688 45319579 ~ 45319804 (-)
G612915 NA non-coding upstream 20971 45510157 ~ 45510426 (-)
G613307 NA non-coding upstream 216400 45705586 ~ 45705804 (-)
G613410 NA non-coding upstream 383184 45872370 ~ 45900132 (-)
G613820 NA non-coding upstream 636674 46125860 ~ 46129320 (-)
G613821 NA non-coding upstream 641173 46130359 ~ 46139862 (-)
G611674 NA other downstream 999740 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 1905528 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 1948527 43526691 ~ 43537037 (-)
LOC110527812 LOC106582796 other downstream 2046579 43435578 ~ 43439076 (-)
G610185 NA other downstream 2328403 43151570 ~ 43157089 (-)
G613411 LOC106582852 other upstream 385779 45874965 ~ 45875700 (-)
LOC110527888 LOC106582868 other upstream 1779137 47260325 ~ 47284791 (-)
G616880 NA other upstream 2997861 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 3695238 49184424 ~ 49186096 (-)
G617632 NA other upstream 3706418 49195604 ~ 49195970 (-)

Expression


Co-expression Network