XLOC_002540


Basic Information

Item Value
gene id XLOC_002540
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4919323 ~ 4922051 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005746
cacacacacatacatatgaatGTGCACATacagacatgcacaaacacacacaatatacactTCCAGTATTCACATATATTGTATTGTTGCAGTCATTTATTTACAGGAAAACTGTTGTTTGGCTATCGCTTGTAGTTTTGTTTACCTGTTACAACTCACCCCAGTATGTGCTACAACCTACCCTAGTTGTGGGGTTGGATGTAACAAATGACCACTTTGTATTTGTCATCTCACAAAGTCTGTGATATAGTTTAGGAAGTTTTAATTGTTGATGTTTGTAGTAGACAAATGTGAGTACTTTGAATAAAAGTTTCAGTCATGTAGCTAAAAAAAAGGTAGTTTTAGGTGCTAAAGAAAAATTTTTGTTACAATCATCCCCGGTCTCcctatttgatacatttttaaagttttcattacattttgggcatgaaatccacactgaatccacccttctgGGCTgcgtttttcaaaagtaatccacttgGATTTTGGATAAGagattggatcaaatcttaaaaatgggtttttcaaaagaaaaaaaattgaataaataatcgggttagatcacgtaatccaatcttggttttgatccagatcaaacctttagtttgggttttttaagaccttttttgtaggatttggatcactttgatccagaaaatctggattaaactgatcccatcagaagggtggattcagcgtggatttcatgcatgtaatgaaaacttaaaaacgTATCAAATACTATATTAGGATCATGTATCTTACAACATatcctatttattcataaggttttaattgtaGTTGTTTATCCGTCAGGCTATTAGCTGATATATTCATGGTTTAAATgagacatttaatttttattaatttgtgaaACCAAATAACTTTGGTAGttattatgaattattgttattaagatggtggcacagtgggtagcacgatcgcctaaacaccaagaaggtcgctgctcgagcctcggctgggtcagttggtgtttctgtgtggagtttgcatgttctccccgtgtttgcgtgggtattctccgtgtgctccggtttcccccacagtccaaagacagctGAATTGAAtgaaattttccatagtgtagtgagctatgtgtgtgaaagagtgtgtgtgggtgtttcccagtcttgGTTTGCGGCTGGAATATGCTGGGTAatttgggggttcattccgctgtggcgatcactgATTATTAACTCATGTAAATCCCATCATTATTATCATGGGAGGTGTGTGCACGACGTCCATCGCCGTGCAGATGCACTGATGTCTACCGGCCACAAGGTGGAGCTCCATCTTCATTTTGACCATCCAAACGACACACCTGATCAGGAGGGAGAGAAAGAAGAAGAGAACGAGAGAAAAACAATTCCCTCACAATCCAACAAGGACGCTGATGAAAGCCCATTCAGATCAGAGGAGGAGGACAGGAGCCCATGTCCAATCCAGCAAATGAAGGACATCCATTGTCAATTTCAGGACAGTTTGAGTACCTCACATCTGCAGAGACAGCTGGACTGAGACAGGATCATGAAGATTTACAGTGAGTTTATTGGAAAAACCTAAAATATACATGATTTTCTAACAATCAATTATCAAACGTGTACATCTATTACTGTACCTACAATATTGCTGTGAAATATTTTAACCTTAAGCATAACTTGAACCAACTTTCAAATCATTTTACTTACTTTATGTTTTACTTTACTCATTTGACTGTGTTTTTGCAATTCATTACCCTACTGTTGACTcatgggtaggcccacacggaatctgcgagcgcagaattccgcagatttctgcagatttttagcctattattaattctgtttatttgcttgagtaaatgtgtaaatctgaatttattcagtttttattcagtaatttattactttttattaaatatattaaggttttatttatgatactccgctggatactcccaaaataattccgcagaaatccacagatttttaccaaaattctcagcagaaatagcaaaaaacctcCACAGATTCTATCTGGCCCTGCTCATGGGTTAAAAATGACCCCAACACCATTAGTGtgggccatatatatatatatatatatatatatataatgtaaattagtAAATATTAACTAAGGGCCAGTCACATATCGCATCTTTTGCacgtgcaagtttgttatttctgatGGAGGCACGTGGCTTGCATATATAGAGCGACAGACTCGTGCTTTTTAGACGTACCTACTAGTTGAAAGAATGCCGCGAGCGCCctacacagagaaaaaaaaatacaaaatgaaaaataccaaacaattttgtTATATAAATGATCGAGAGGTTCAGCTGCCTTTCTTCACTGTAAAAGGGAAAAACCTATATAAAAACTTACAGCTATTCTGTaatttagatttacattagacaaatactacttatttatgtgttcatttatttatttatttatttttaatttaatttaattagattta

Function

GO:

id name namespace
GO:0044281 small molecule metabolic process biological_process
GO:0044282 small molecule catabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005746 True 2502 lncRNA 0.36 2 4919323 4922051

Neighbor

gene id symbol gene type direction distance location
XLOC_002539 NA coding downstream 100717 4812304 ~ 4818606 (-)
XLOC_002538 NA coding downstream 336303 4573554 ~ 4583020 (-)
XLOC_002537 NA coding downstream 341471 4508389 ~ 4577852 (-)
XLOC_002536 CABZ01073795.1 coding downstream 544133 4367430 ~ 4375190 (-)
XLOC_002535 grin3a coding downstream 603308 4279521 ~ 4316015 (-)
XLOC_002541 snx30 coding upstream 18716 4940767 ~ 4961929 (-)
XLOC_002542 mat2al coding upstream 47583 4969634 ~ 4980150 (-)
XLOC_002543 hnrnpd coding upstream 78572 5000623 ~ 5024520 (-)
XLOC_002544 tmem150c coding upstream 119926 5041977 ~ 5058823 (-)
XLOC_002545 sec31a coding upstream 170460 5092511 ~ 5135788 (-)
XLOC_002534 NA non-coding downstream 820140 4095871 ~ 4099183 (-)
XLOC_002532 NA non-coding downstream 873006 4032478 ~ 4046317 (-)
XLOC_002546 NA non-coding upstream 299864 5221915 ~ 5223942 (-)
XLOC_002547 CU466285.1 non-coding upstream 603342 5525393 ~ 5527364 (-)
XLOC_002550 NA non-coding upstream 866569 5788620 ~ 5821584 (-)
XLOC_002554 CABZ01032180.1 non-coding upstream 1028412 5950463 ~ 5950578 (-)
XLOC_002555 NA non-coding upstream 1114830 6036881 ~ 6037746 (-)

Expression


Co-expression Network