G613821


Basic Information

Item Value
gene id G613821
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 46130359 ~ 46139862 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU698688
agcCACTTCCCCCTGCCACTCACGAGAGATCAtgtcttcctctctgacaagcgGTTTCAACTCGATATTGGTATTTGAGGTCTGGTCCAACAGAATTGGTCATATGGACACCGAAACCCATTGTGTGGAGAAGGAAACCTTTCTATCAATACTCTTTTTATATCTCAACTCCTCAAATTGCgcagagcagacactactaaAATGGGAGCatcaatgaacattgattctgccaaacgtgatgaacaaaacggagcgatttctcctacacaaataatctttttggaaaaactgaacatttgctatctaagtgagagtctcctcattgaaaacatccgaagttcttcaaagGCAGAATCAATCAATCACCACACCGTGGCTCGGCTCTGCCGCGCATTCCAGGCACAGCCCCTCGCTTCTGGGGGAGGAGATGGCAGTGTTAGCCAAGCCAAATTTGATCAACCAATGCAGTTCCCCTGTGCCACAGCTATCTGGGATGAAGATGATATTATCTGGACGTGAGCAAAGTGAtgaagacagcagagagagagagagaagtccagGTGGATCTTAGCTTCCTCTTAAAGGCACAGCGCCTCTTGTTCTGGGAGCAAGGGTAATACATGACACTGTGTGACACCGCTGTTGCCTCTCTTGTACAGATCAAGGCGCCAAGCATTTCTATGCTGAAGACAAGTTTTAAATTAATTATCAGAGCGTGTATTAAAAAAATCTAACTTGTCCGTCTACCACAATTACATACCAATTAAAGACACAATCCTGGTAGGTACTCCTCAAACTGACATttcacatcaatcaatcaaatgtattttataaagccctttttacatctgcGGTTGTCACAAAgcgcttatacagaaacccagcctaaaaccccaaagagcaagcaatgcagatgtagatgtaATTCCTTAAACAGATTTAATGACATGCATGAACGTTTTCATGGAGGTTACTACGTTTGCATTTAGCAATGAGGAAAAATGAGTATAGTGTTTAGACTGCAGATAAGGGCTGGTAATTCAGAGCTCTATATTTATGCTTCATATTTATCCAATTCAAAATACCATCTTTCTGATTCTAACTTTCTTTTGCGTGTTAATGTTTAATAAGGGACCTTGGCTATCCATGGGCACAATTATTAAATATCCGCAGagatatttgtttttttataaatCATACTCTCGATTTTTTACTTATCTGATATATACATGTGTTGGTCGTTTAACAACCAAACTGTTGTGTGCGCAACCATGGGGCAAAACATatggggttggcttagattgttgaaaCATGTAAACTTTACTTTGTCTCCAATGTTCATTGAAAACATGAATGCGTTtccacaatgagcacttgttatctctcaaatacatcattacagttattagttagctagctagctagcggatTTTTGCCATTTCAGTATAGACGTCTATATTTCAGTATAGACGTAAAAATctaaacaagacatggtatcaagaacgaAATAAAACTAGCTGAAACAAGCCACGTACGATTCCCCAAATGGCAGCTTCTTGTTATTGTTGCCAGCCATCTCGCCATCAGAATCACAAAAACACATggacttctgccccattgaagcgtgCGCAAAGTTTTTGTCAAGTTGTCGGCTAACCCGTCTATAGGAAATGGCTTTAAGACCTGTGCCTTTTAGCCAGTCATATCCTCAATAACAGACATAATCCAATGGTTGCCAGGGAATGTTGCTTATGGAAAACAACAATTGCATCAATATAGTAATTAACAGATTGTTTATAACATTGGCATGTATATGCCATAATGTCACAACACGGATTAGCCTGTTACAAGCGGCAATGATTACACAAATGTTTATCTGAGGCATGACAAAAAGAAAATTGACTGCTTGCATAATTATGAAGAATATTACACAAGTGGAGTAGTGGGGATTGTTATATGGGAGGAAGTTGTGTCGATAAGTGCAGACATTAGGGAAatgactgcctctctctcacacacacacacgcattaacACACTTCCAGAAGTATCAGCCACAGCAATGTGTTTGCATATGAACACTGGcaacacctgcacacacacacacacaattgcatAAAACAAGATAGCTTGTGCATTGTAAATGTCCACACAACTACATTATACAGACAGACAAAGGCCCTTTAGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU698688 True 2187 lncRNA 0.40 3 46130359 46139862

Neighbor

gene id symbol gene type direction distance location
gpr27 LOC106582853 coding downstream 158347 45969430 ~ 45972012 (-)
LOC110527871 LOC106582850 coding downstream 379522 45734357 ~ 45750837 (-)
ppp4r2b LOC106582851 coding downstream 398845 45725312 ~ 45731514 (-)
chl1b LOC100380675 coding downstream 817382 45236873 ~ 45312977 (-)
LOC110527866 LOC106582846 coding downstream 958953 45085520 ~ 45171406 (-)
LOC110528957 LOC106565741 coding upstream 177667 46317529 ~ 46333627 (-)
LOC110527878 LOC106582858 coding upstream 202126 46341988 ~ 46374962 (-)
praf3 praf3 coding upstream 317153 46457015 ~ 46460324 (-)
LOC110527887 LOC106582866 coding upstream 905456 47045318 ~ 47141560 (-)
LOC110528959 LOC106582867 coding upstream 1005043 47144905 ~ 47146014 (-)
G613820 NA non-coding downstream 1039 46125860 ~ 46129320 (-)
G613410 NA non-coding downstream 230227 45872370 ~ 45900132 (-)
G613307 NA non-coding downstream 424555 45705586 ~ 45705804 (-)
G612915 NA non-coding downstream 619933 45510157 ~ 45510426 (-)
G612891 NA non-coding downstream 641173 45485492 ~ 45489186 (-)
G613880 LOC106582854 non-coding upstream 57980 46197842 ~ 46198275 (-)
G613881 NA non-coding upstream 65159 46205021 ~ 46209544 (-)
G613911 NA non-coding upstream 110051 46249913 ~ 46250150 (-)
G613913 NA non-coding upstream 113617 46253479 ~ 46253874 (-)
G613932 NA non-coding upstream 138859 46278721 ~ 46279156 (-)
G613411 LOC106582852 other downstream 254659 45874965 ~ 45875700 (-)
G611674 NA other downstream 1644607 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 2550395 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 2593394 43526691 ~ 43537037 (-)
LOC110527812 LOC106582796 other downstream 2691446 43435578 ~ 43439076 (-)
LOC110527888 LOC106582868 other upstream 1128461 47260325 ~ 47284791 (-)
G616880 NA other upstream 2347185 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 3044562 49184424 ~ 49186096 (-)
G617632 NA other upstream 3055742 49195604 ~ 49195970 (-)
mustn1b mstn1 other upstream 3155393 49295040 ~ 49297305 (-)

Expression


Co-expression Network