G613666


Basic Information

Item Value
gene id G613666
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 46282497 ~ 46286328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU698527
gaatgaggacccaaaagcgaattaatgtaaacagagcttctttaataaccaaacataggtaggctcagatggaccggcagattccgacaggacaggacaaggttgcagcaaacatgacgatagtctggttcaggcatgactaacacaaacaagaatccgacaaagacaggagcagaaagagagagagatatagagacctaatcagagggaaaaagggaacaggtgggaaaaggggtgaacgaggtagtcagagaagacaagggacagctgggggaaagagggggagaaaaggtaacctaacacgaccagcagagggagacagggtgaagagaaaggacagaaacaagacacaacatgacagtacatgacactcacagacaatatttttacagttttggaaactttagagtgttttctatcataatc
>TU698529
gaatgaggacccaaaagcgaattaatgtaaacagagcttctttaataaccaaacataggtaggctcagatggaccggcagattccgacaggacaggacaaggttgcagcaaacatgacgatagtctggttcaggcatgactaacacaaacaagaatccgacaaagacaggagcagaaagagagagagatatagagacctaatcagagggaaaaagggaacaggtgggaaaaggggtgaacgaggtagtcagagaagacaagggacagctgggggaaagagggggagaaaaggtaacctaacacgaccagcagagggagacagggtgaagagaaaggacagaaacaagacacaacatgacagtacatgacactcacagacaatatttttacagttttggaaactttagagtgttttctatcataatc
>TU698530
gaatgaggacccaaaagcgaattaatgtaaacagagcttctttaataaccaaacataggtaggctcagatggaccggcagattccgacaggacaggacaaggttgcagcaaacatgacgatagtctggttcaggcatgactaacacaaacaagaatccgacaaagacaggagcagaaagagagagagatatagagacctaatcagagggaaaaagggaacaggtgggaaaaggggtgaacgaggtagtcagagaagacaagggacagctgggggaaagagggggagaaaaggtaacctaacacgaccagcagagggagacagggtgaagagaaaggacagaaacaagacacaacatgacagtacatgacactcacagacaatatttttacagttttggaaactttagagtgttttctatcataatc

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU698527 False 426 lncRNA 0.44 2 46282497 46286328
TU698529 False 426 lncRNA 0.44 2 46282497 46286328
TU698530 True 426 lncRNA 0.44 2 46282497 46286328

Neighbor

gene id symbol gene type direction distance location
foxp1b LOC106582854 coding upstream 72944 45997787 ~ 46209553 (+)
LOC110527875 NA coding upstream 285378 45992287 ~ 45997119 (+)
prok2 LOC106582788 coding upstream 315328 45964395 ~ 45967169 (+)
LOC110527873 LOC106582852 coding upstream 399096 45843163 ~ 45883401 (+)
shq1 shq1 coding upstream 472878 45768698 ~ 45809619 (+)
LOC110527877 LOC106582857 coding downstream 52485 46338813 ~ 46341970 (+)
LOC110527879 LOC106582859 coding downstream 102630 46388958 ~ 46451934 (+)
LOC110527880 NA coding downstream 175382 46461710 ~ 46468087 (+)
LOC110527881 LOC106582781 coding downstream 192016 46478344 ~ 46479954 (+)
LOC110527882 LOC106582861 coding downstream 297437 46583765 ~ 46596389 (+)
G613663 NA non-coding upstream 4076 46278214 ~ 46278421 (+)
G613647 NA non-coding upstream 28199 46254087 ~ 46254298 (+)
G613612 NA non-coding upstream 70280 46211813 ~ 46212217 (+)
G613591 NA non-coding upstream 148231 46129775 ~ 46134266 (+)
G613982 NA non-coding downstream 68614 46354942 ~ 46355408 (+)
G614004 NA non-coding downstream 84444 46370772 ~ 46370994 (+)
G614063 NA non-coding downstream 135986 46422314 ~ 46422603 (+)
G614067 NA non-coding downstream 142230 46428558 ~ 46428855 (+)
G614074 NA non-coding downstream 154188 46440516 ~ 46440807 (+)
G613664 NA other upstream 3164 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 2254269 44002556 ~ 44035143 (+)
G610622 NA other upstream 2450617 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 2697601 43584020 ~ 43584896 (+)
G610436 NA other upstream 2871691 43410391 ~ 43410806 (+)
LOC110528958 NA other downstream 345794 46629591 ~ 46638492 (+)
G615624 NA other downstream 1553060 47839388 ~ 47839722 (+)
G617133 NA other downstream 2540499 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 3285992 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 4017102 50303430 ~ 50304232 (+)

Expression


Co-expression Network