XLOC_025402


Basic Information

Item Value
gene id XLOC_025402
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 28649947 ~ 28733765 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052691
GGCGCTGTAGACAAGTTTTTAACCGTAAACGCAAATGCTCACTAGGAAGAGTGCCTGTGCATTCGGCTAGTCATTTCTGTAAAAGACAAGACGTGGGTGCAACAGTCAATACGTCCATCTAAAAAAGAAATAGGAAGTGCGGGAATGCAGAAAACACATAAGGTTCCTTCTGACGATGCAAATATGATCAGTATCAAAGATGCTCACCAGAATGACCAGCCATAGTCCCATGTGTGAGGCCTCCAGTCTTCAGGTCCCAAGCTGACTGTAATCTGGAACACTTGTGTGTACATCATGTGGGCCACCATTCCCAGAAGACCTGTTGAGTAATCCACATGTCCATGTGAGGTGGGGACATGGGTGGAGGCCTACCTGACAGCACGGTGAAGACTGCGGCGAAGGCGTTCAGTTTGAGTCCATCGATCACATTACTGGAGTGAAAAAGCTCCAGGCACATCAGACTGAAGCCAACGACCAGCAGCATGATGTATAGCACCTCAGACACAACTGACAGCCAAAGGACAcctgcaatacacacacacatacacaggcacaCTGGTGAGCAAAGCGCTCAGCTCCTGCTCCATAATTCTCTTTGCCGCTTTTATTCACGCGATTAGATTCAAGTGGAATTTTAGCAACTCGCCCCCTGCTAATAAAACAGACATGGGCTGGACATATTTCTGCATATCACATGCACTgtaaaaggtgtttttttactttgcttaaaaaagtgagtaaacctgttgcagTTAAAGGGGACAAGctgactttacctaaaaaaacaaactttgtaACTTGGAATTATGTTgattaaacttaatttttataattatgcacaaagTTTTGTCATTTACTTAATGGTGCTGTaagtacgtttttgactcttctaaagca
>TCONS_00050115
GCGCTGTAGACAAGTTTTTAACCGTAAACGCAAATGCTCACTAGGAAGAGTGCCTGTGCATTCGGCTAGTCATTTCTGTAAAAGACAAGACGTGGGTGCAACAGTCAATACGTCCATCTAAAAAAGAAATAGGAAGTGCGGGAATGCAGAAAACACATAAGGTTCCTTCTGACGATGCAAATATGATCAGTATCAAAGATGCTCACCAGAATGACCAGCCATAGTCCCATGTGTGAGGCCTCCAGTCTTCAGGTCCCAAGCTGACTGTAATCTGGAACACTTGTGTGTACATCATGTGGGCCACCATTCCCAGAAGACCTGTTGAGTAATCCACATGTCCACTGGAATTAAAGAGGAGCATTAAGGCCCCAAATGAAAAGGGCTATTGGGTATTCAGCAAATCAAATAATCAAAAATTCAAAAAGCAGCAGCTGTTCTGGCTTTATAAATTGTGAGGTGGGGACATGGGTGGAGGCCTACCTGACAGCACGGTGAAGACTGCGGCGAAGGCGTTCAGTTTGAGTCCATCGATCACATTACTGGAGTGAAAAAGCTCCAGGCACATCAGACTGAAGCCAACGACCAGCAGCATGATGTATAGCACCTCAGACACAACTGACAGCCAAAGGACAcctgcaatacacacacacatacacaggcacaCTGGTGAGCAAAGCGCTCAGCTCCTGCTCCATAATTCTCTTTGCCGCTTTTATTCACGCGATTAGATTCAAGTGGAATTTTAGCAACTCGCCCCCTGCTAATAAAACAGACATGGGCTGGACATATTTCTGCATATCACATGCACTgtaaaaggtgtttttttactttgcttaaaaaagtgagtaaacctgttgcagTTAAAGGGGACAAGctgactttacctaaaaaaacaaactttgtaACTTGGAATTATGTTgattaaacttaatttttataattatgcacaaagTTTTGTCATTTACTTAATGGTGCTGTaagtacgtttttgactcttctaaagca
>TCONS_00050113
GCGCTGTAGACAAGTTTTTAACCGTAAACGCAAATGCTCACTAGGAAGAGTGCCTGTGCATTCGGCTAGTCATTTCTGTAAAAGACAAGACGTGGGTGCAACAGTCAATACGTCCATCTAAAAAAGAAATAGGAAGTGCGGGAATGCAGAAAACACATAAGCAGGTTCCTTCTGACGATGCAAATATGATCAGTATCAAAGATGCTCACCAGAATGACCAGCCATAGTCCCATGTGTGAGGCCTCCAGTCTTCAGGTCCCAAGCTGACTGTAATCTGGAACACTTGTGTGTACATCATGTGGGCCACCATTCCCAGAAGACCTGTTGAGTAATCCACATGTCCACTGGAATTAAAGAGGAGCATTAAGGCCCCAAATGAAAAGGGCTATTGGGTATTCAGCAAATCAAATAATCAAAAATTCAAAAAGCAGCAGCTGTTCTGGCTTTATAAATTGTGAGGTGGGGACATGGGTGGAGGCCTACCTGACAGCACGGTGAAGACTGCGGCGAAGGCGTTCAGTTTGAGTCCATCGATCACATTACTGGAGTGAAAAAGCTCCAGGCACATCAGACTGAAGCCAACGACCAGCAGCATGATGTATAGCACCTCAGACACAACTGACAGCCAAAGGACAcctgcaatacacacacacatacacaggcacaCTGGTGAGCAAAGCGCTCAGCTCCTGCTCCATAATTCTCTTTGCCGCTTTTATTCACGCGATTAGATTCAAGTGGAATTTTAGCAACTCGCCCCCTGCTAATAAAACAGACATGGGCTGGACATATTTCTGCATATCACATGCACTgtaaaaggtgtttttttactttgcttaaaaaagtgagtaaacctgttgcagTTAAAGGGGACAAGctgactttacctaaaaaaacaaactttgtaACTTGGAATTATGTTgattaaacttaatttttataattatgcacaaagTTTTGTCATTTACTTAATGGTGCTGTaagtacgtttttgactcttctaaagca
>TCONS_00052692
CAAGTTTTTAACCGTAAACGCAAATGCTCACTAGGAAGAGTGCCTGTGCATTCGGCTAGTCATTTCTGTAAAAGACAAGACGTGGGTGCAACAGTCAATACGTCCATCTAAAAAAGAAATAGGAAGTGCGGGAATGCAGAAAACACATAAGGCCCAGCCTCCGTACCCGTGTTATTTGGATTTACTGACGAAGCACACAAGCCCTATCACAACAAACAAGAAGAGAATGGAGCCTGGTGCTTCTGCCACGGACAGATGTGCGATGTTTGGCACACAATGAGGGTTGGGGGATGGGACAAGAGGGAACGGGGGAGATGGGATAGTGG
>TCONS_00050112
AACCGTAAACGCAAATGCTCACTAGGAAGAGTGCCTGTGCATTCGGCTAGTCATTTCTGTAAAAGACAAGACGTGGGTGCAACAGTCAATACGTCCATCTAAAAAAGAAATAGGAAGTGCGGGAATGCAGAAAACACATAAGCAGGTTCCTTCTGACGATGCAAATATGATCAGTATCAAAGATGCTCACCAGAATGACCAGCCATAGTCCCATGTGTGAGGCCTCCAGTCTTCAGGTCCCAAGCTGACTGTAATCTGGAACACTTGTGTGTACATCATGTGGGCCACCATTCCCAGAAGACCTGTTGAGTAATCCACATGTCCACTGGAATTAAAGAGGAGCATTAAGGCCCCAAATGAAAAGGGCTATTGGGTATTCAGCAAATCAAATAATCAAAAATTCAAAAAGCAGCAGCTGTTCTGGCTTTATAAATGTGAGGGTTTACCCACAATGCATCTGATATTAAGTAAAACGTTTAATTCTgtgaaatattgttttataaatcttatgtttttttttttaaataaaatgtaatggaaaaGCTG
>TCONS_00050114
GTAAACGCAAATGCTCACTAGGAAGAGTGCCTGTGCATTCGGCTAGTCATTTCTGTAAAAGACAAGACGTGGGTGCAACAGTCAATACGTCCATCTAAAAAAGAAATAGGAAGTGCGGGAATGCAGAAAACACATAAGATGTCACCACAGGCCTCATAACAGCTGGAATGATGACCATAGGGTGGGTGCATAACCTGTTCAATTCAGCAAGCATCTGAATTCAAGCAAACATCCCTGATGAGGTTCCTTCTGACGATGCAAATATGATCAGTATCAAAGATGCTCACCAGAATGACCAGCCATAGTCCCATGTGTGAGGCCTCCAGTCTTCAGGTCCCAAGCTGACTGTAATCTGGAACACTTGTGTGTACATCATGTGGGCCACCATTCCCAGAAGACCTGTTGAGTAATCCACATGTCCACTGGAATTAAAGAGGAGCATTAAGGCCCCAAATGAAAAGGGCTATTGGGTATTCAGCAAATCAAATAATCAAAAATTCAAAAAGCAGCAGCTGTTCTGGCTTTATAAATGTGAGGGTTTACCCACAATGCATCTGATATTAAGTAAAACGTTTAATTCTgtgaaatattgttttataaatcttatgtttttttttttaaataaaatgtaatggaaaaGCTG
>TCONS_00052344
GACAACACCCTTGaagaactttttacagtgtgctttatTAAAGTTCACTCTTCATCCGCGGAATAATAGTCCTCCTGACCGGATGAGCAGTGCAGGTGTGGCGGTAGCCCCTGCTCCTCCTCCAGATGCTCCAGCGCACGGATCTCCTCCAGTACGTCTGCCGCAGGTTCCTTCTGACGATGCAAATATGATCAGTATCAAAGATGCTCACCAGAATGACCAGCCATAGTCCCATGTGTGAGGCCTCCAGTCTTCAGGTCCCAAGCTGACTGTAATCTGGAACACTTGTGTGTACATCATGTGGGCCACCATTCCCAGAAGACCTGTTGAGTAATCCACATGTCCACTGGAATTAAAGAGGAGCATTAAGGCCCCAAATGAAAAGGGCTATTGGGTATTCAGCAAATCAAATAATCAAAAATTCAAAAAGCAGCAGCTGTTCTGGCTTTATAAATGTGAGGGTTTACCCACAATGCATCTGATATTAAGTAAAACGTTTAATTCTgtgaaatattgttttataaatcttatgtttttttttttaaataaaatgtaatggaaaaG
>TCONS_00050116
GACAACACCCTTGaagaactttttacagtgtgctttatTAAAGTTCACTCTTCATCCGCGGAATAATAGTCCTCCTGACCGGATGAGCAGTGCAGGTGTGGCGGTAGCCCCTGCTCCTCCTCCAGATGCTCCAGCGCACGGATCTCCTCCAGTACGTCTGCCGCAGGTTCCTTCTGACGATGCAAATATGATCAGTATCAAAGATGCTCACCAGAATGACCAGCCATAGTCCCATGTGTGAGGCCTCCAGTCTTCAGGTCCCAAGCTGACTGTAATCTGGAACACTTGTGTGTACATCATGTGGGCCACCATTCCCAGAAGACCTGTTGAGTAATCCACATGTCCACTGGAATTAAAGAGGAGCATTAAGGCCCCAAATGAAAAGGGCTATTGGGTATTCAGCAAATCAAATAATCAAAAATTCAAAAAGCAGCAGCTGTTCTGGCTTTATAAATTGTGAGGTGGGGACATGGGTGGAGGCCTACCTGACAGCACGGTGAAGACTGCGGCGAAGGCGTTCAGTTTGAGTCCATCGATCACATTACTGGAGTGAAAAAGCTCCAGGCACATCAGACTGAAGCCAACGACCAGCAGCATGATGTATAGCACCTCAGACACAACTGACAGCCAAAGGACAcctgcaatacacacacacatacacaggcacaCTGGTGAGCAAAGCGCTCAGCTCCTGCTCCATAATTCTCTTTGCCGCTTTTATTCACGCGATTAGATTCAAGTGGAATTTTAGCAACTCGCCCCCTGCTAATAAAACAGACATGGGCTGGACATATTTCTGCATATCACATGCACTgtaaaaggtgtttttttactttgcttaaaaaagtgagtaaacctgttgcagTTAAAGGGGACAAGctgactttacctaaaaaaacaaactttgtaACTTGGAATTATGTTgattaaacttaatttttataattatgcacaaagTTTTGTCATTTACTTAATGGTGCTGTaagtacgtttttgactcttctaaagca
>TCONS_00052693
atTAAAGTTCACTCTTCATCCGCGGAATAATAGTCCTCCTGACCGGATGAGCAGTGCAGGTGTGGCGGTAGCCCCTGCTCCTCCTCCAGATGCTCCAGCGCACGGATCTCCTCCAGTACGTCTGCCGGTTCCTTCTGACGATGCAAATATGATCAGTATCAAAGATGCTCACCAGAATGACCAGCCATAGTCCCATGTGTGAGGCCTCCAGTCTTCAGGTCCCAAGCTGACTGTAATCTGGAACACTTGTGTGTACATCATGTGGGCCACCATTCCCAGAAGACCTGTTGAGTAATCCACATGTCCACTGGAATTAAAGAGGAGCATTAAGGCCCCAAATGAAAAGGGCTATTGGGTATTCAGCAAATCAAATAATCAAAAATTCAAAAAGCAGCAGCTGTTCTGGCTTTATAAATTGTGAGGTGGGGACATGGGTGGAGGCCTACCTGACAGCACGGTGAAGACTGCGGCGAAGGCGTTCAGTTTGAGTCCATCGATCACATTACTGGAGTGAAAAAGCTCCAGGCACATCAGACTGAAGCCAACGACCAGCAGCATGATGTATAGCACCTCAGACACAACTGACAGCCAAAGGACAcctgcaatacacacacacatacacaggcacaCTGGTGAGCAAAGCGCTCAGCTCCTGCTCCATAATTCTCTTTGCCGCTTTTATTCACGCGATTAGATTCAAGTGGAATTTTAGCAACTCGCCCCCTGCTAATAAAACAGACATGGGCTGGACATATTTCTGCATATCACATGCACTgtaaaaggtgtttttttactttgcttaaaaaagtgagtaaacctgttgcagTTAAAGGGGACAAGctgactttacctaaaaaaacaaactttgtaACTTGGAATTATGTTgattaaacttaatttttataattatgcacaaagTTTTGTCATTTACTTAATGGTGCTGTaagtacgtttttgactcttctaaagca
>TCONS_00050117
AATAATAGTCCTCCTGACCGGATGAGCAGTGCAGGTGTGGCGGTAGCCCCTGCTCCTCCTCCAGATGCTCCAGCGCACGGATCTCCTCCAGTACGTCTGCCGCAGGTTCCTTCTGACGATGCAAATATGATCAGTATCAAAGATGCTCACCAGAATGACCAGCCATAGTCCCATGTGTGAGGCCTCCAGTCTTCAGGTCCCAAGCTGACTGTAATCTGGAACACTTGTGTGTACATCATGTGGGCCACCATTCCCAGAAGACCTGTTGAGTAATCCACATGTCCATGTGAGGTGGGGACATGGGTGGAGGCCTACCTGACAGCACGGTGAAGACTGCGGCGAAGGCGTTCAGTTTGAGTCCATCGATCACATTACTGGAGTGAAAAAGCTCCAGGCACATCAGACTGAAGCCAACGACCAGCAGCATGATGTATAGCACCTCAGACACAACTGACAGCCAAAGGACAcctgcaatacacacacacatacacaggcacaCTGGTGAGCAAAGCGCTCAGCTCCTGCTCCATAATTCTCTTTGCCGCTTTTATTCACGCGATTAGATTCAAGTGGAATTTTAGCAACTCGCCCCCTGCTAATAAAACAGACATGGGCTGGACATATTTCTGCATATCACATGCACTgtaaaaggtgtttttttactttgcttaaaaaagtgagtaaacctgttgcagTTAAAGGGGACAAGctgactttacctaaaaaaacaaactttgtaACTTGGAATTATGTTgattaaacttaatttttataattatgcacaaagTTTTGTCATTTACTTAATGGTGCTGTaagtacgtttttgactcttctaaagca

Function

GO:

id name namespace
GO:0000912 assembly of actomyosin apparatus involved in cytokinesis biological_process
GO:0000915 actomyosin contractile ring assembly biological_process
GO:0032185 septin cytoskeleton organization biological_process
GO:0044837 actomyosin contractile ring organization biological_process
GO:0031106 septin ring organization biological_process
GO:0032506 cytokinetic process biological_process
GO:0005826 actomyosin contractile ring cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000096409

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052691 False 897 lncRNA 0.44 4 28649947 28733765
TCONS_00050115 False 1005 lncRNA 0.43 5 28649948 28733765
TCONS_00050113 False 1008 lncRNA 0.43 5 28649948 28733765
TCONS_00052692 False 326 lncRNA 0.48 3 28649958 28659568
TCONS_00050112 False 546 lncRNA 0.40 4 28649967 28732598
TCONS_00050114 False 643 lncRNA 0.40 5 28649971 28732598
TCONS_00052344 False 564 lncRNA 0.43 3 28699098 28732595
TCONS_00050116 False 1010 lncRNA 0.44 4 28699098 28733765
TCONS_00052693 False 971 lncRNA 0.45 4 28699134 28733765
TCONS_00050117 True 840 lncRNA 0.46 3 28699159 28733765

Neighbor

gene id symbol gene type direction distance location
XLOC_025401 sept12 coding upstream 22500 28502419 ~ 28627447 (+)
XLOC_025400 TMEM114 coding upstream 697645 27929505 ~ 27952302 (+)
XLOC_025399 carhsp1 coding upstream 818132 27798094 ~ 27831815 (+)
XLOC_025398 nat15 coding upstream 853596 27786601 ~ 27796351 (+)
XLOC_025397 eci1 coding upstream 872276 27770110 ~ 27777671 (+)
XLOC_025403 NA coding downstream 31928 28765693 ~ 28783757 (+)
XLOC_025404 flr coding downstream 97685 28831450 ~ 28853935 (+)
XLOC_025405 alg1 coding downstream 126518 28860283 ~ 28869640 (+)
XLOC_025406 NA coding downstream 165364 28899129 ~ 28926075 (+)
XLOC_025407 lgals1l1 coding downstream 205994 28939759 ~ 28946756 (+)
XLOC_025429 BX649540.1 misc downstream 1514974 30248739 ~ 30249036 (+)
XLOC_025393 NA non-coding upstream 1048474 27594373 ~ 27601473 (+)
XLOC_025391 NA non-coding upstream 1155142 27346839 ~ 27494805 (+)
XLOC_025392 BX000529.1 non-coding upstream 1242736 27407096 ~ 27407211 (+)
XLOC_025390 NA non-coding upstream 1306258 27294308 ~ 27343689 (+)
XLOC_025384 NA non-coding upstream 2013549 26635820 ~ 26636398 (+)
XLOC_025410 BX005369.1 non-coding downstream 433255 29167020 ~ 29167147 (+)
XLOC_025411 NA non-coding downstream 659700 29393465 ~ 29398151 (+)
XLOC_025412 BX649558.1 non-coding downstream 672248 29406013 ~ 29409959 (+)

Expression


Co-expression Network