XLOC_025403


Basic Information

Item Value
gene id XLOC_025403
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 28765693 ~ 28783757 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052694
cttttccaaatgatcaactaaatgtcaagttattatgtgttgctcacAACTAGAATCGACGACAAGagttttttcagcaacaaaaaaaagttgttttttatccTCCTGTGCTGCTGAGTACGAAAAACCAGACAGGCCACATTTTGTGTGACTGAGCAAATGAGCAGGACGTGTTTGCAGCCGGCTGTGAGACTGAATGCAGGAAGTTGCAGACACCGGACACACACTGTGCAGAGTTGCTCGCCTCAAGGTGTTTTCCAGAGTTTAACAGTGTGATGTTCCACCAGATCATCATTTGCAATTCCGACTGAATAAGCAGTTCGGGGACATTGGCAGAGACACTTCAGTGGGCCCCTAATTCTCCCTGCCCCAGAATGACGTGGGTTGGGACCCTCGTGACGACATCTGCCGCTCTCCATATGCATTTTAGGACAGGCAATATATCTGGATGGCTGTCCCTGGTATGGGACGGACCACCTCCAGGTAACCTCAATACAACGAAAAGCAGAGCGTCATTCAACACCTTCTACTGACACTGAGATTTAATGAGACACTTACCTTTGCGCTGGCAAGGCCGATATTAACACCGGTGAGTCATTCAAGGAGATCACTTCACACAGAATGtaatcccacacacacacacagacatacatgaACACACACTTCATCGTAAAGTCATCCCGAGCCCCCCCTTGGCAGGAAGCATCTGGCTGGCATAGTGTTGCAGGTGGTGGAGTGTGACACTTGCCACCTGGCACTCCTCTGAAGTGGTCTTCACATACTGGCCTCCATGCTGCCTTTCGGTATTGACCACCTGCTAGATTGGCTCAATCATGGGATGGCGTCCAACACTATTATTACCGTCGCAGGTATTGTATTGTCATTGGCATTCTGATGTCTTGAGAGCAGAATTTCGGATGGTGTGTTCGTTTGAGTGAGATTAGGGTTTACTTTTGTCATTGATGGTTTGAATGTTGTCAGTGAACATTATGAAATACTTTGTTCATTGATTTATAGGCTGTgcttgccaaaataaaaaatgttacaagATATTAACAACAGATTTGAACTGGAATAAGCAGAATTAAATAGAACGCAATGCAATT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052694 True 1106 lncRNA 0.45 2 28765693 28783757

Neighbor

gene id symbol gene type direction distance location
XLOC_025402 NA coding upstream 31928 28649947 ~ 28733765 (+)
XLOC_025401 sept12 coding upstream 138246 28502419 ~ 28627447 (+)
XLOC_025400 TMEM114 coding upstream 813391 27929505 ~ 27952302 (+)
XLOC_025399 carhsp1 coding upstream 933878 27798094 ~ 27831815 (+)
XLOC_025398 nat15 coding upstream 969342 27786601 ~ 27796351 (+)
XLOC_025404 flr coding downstream 47693 28831450 ~ 28853935 (+)
XLOC_025405 alg1 coding downstream 76526 28860283 ~ 28869640 (+)
XLOC_025406 NA coding downstream 115372 28899129 ~ 28926075 (+)
XLOC_025407 lgals1l1 coding downstream 156002 28939759 ~ 28946756 (+)
XLOC_025408 lgals2a coding downstream 169517 28953274 ~ 28961518 (+)
XLOC_025429 BX649540.1 misc downstream 1464982 30248739 ~ 30249036 (+)
XLOC_025393 NA non-coding upstream 1164220 27594373 ~ 27601473 (+)
XLOC_025391 NA non-coding upstream 1270888 27346839 ~ 27494805 (+)
XLOC_025392 BX000529.1 non-coding upstream 1358482 27407096 ~ 27407211 (+)
XLOC_025390 NA non-coding upstream 1422004 27294308 ~ 27343689 (+)
XLOC_025410 BX005369.1 non-coding downstream 383263 29167020 ~ 29167147 (+)
XLOC_025411 NA non-coding downstream 609708 29393465 ~ 29398151 (+)
XLOC_025412 BX649558.1 non-coding downstream 622256 29406013 ~ 29409959 (+)
XLOC_025417 NA non-coding downstream 856227 29639984 ~ 29640294 (+)

Expression


Co-expression Network