Gene
RNA
| Item | Value |
|---|---|
| gene id | G615347 |
| gene name | LOC106582875 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 47407726 ~ 47408133 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| CXXC-type zinc finger protein 1-like isoform X4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU700299 | True | 284 | lncRNA | 0.47 | 2 | 47407726 | 47408133 |
47,406,800
47,407,200
47,407,600
47,408,000
47,408,400
47,408,800
47,409,200
47,409,200
47,409,600
47,410,000
47,410,400
47,410,800
47,411,200
47,411,600
NC_048571.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110527889 | LOC100380687 | coding | upstream | 105631 | 47296738 ~ 47302095 (+) |
| sema3fb | LOC106582865 | coding | upstream | 378177 | 46936288 ~ 47029549 (+) |
| bhlhe40 | LOC106582864 | coding | upstream | 597264 | 46806447 ~ 46810462 (+) |
| itpr1b | LOC106582863 | coding | upstream | 606955 | 46660325 ~ 46800771 (+) |
| LOC118965406 | NA | coding | upstream | 773460 | 46634214 ~ 46634266 (+) |
| LOC110527899 | LOC106582878 | coding | downstream | 102867 | 47511000 ~ 47524578 (+) |
| LOC110527900 | LOC106582882 | coding | downstream | 121252 | 47529385 ~ 47535288 (+) |
| LOC110527907 | LOC106582887 | coding | downstream | 155931 | 47564064 ~ 47566159 (+) |
| si:ch211-232b12.5 | LOC106582889 | coding | downstream | 213338 | 47621471 ~ 47639848 (+) |
| LOC110527910 | LOC106582895 | coding | downstream | 303397 | 47711530 ~ 47715289 (+) |
| G615354 | LOC106582875 | non-coding | upstream | 434 | 47406768 ~ 47407292 (+) |
| G615357 | LOC106582875 | non-coding | upstream | 1113 | 47405921 ~ 47406613 (+) |
| G615292 | NA | non-coding | upstream | 112726 | 47294546 ~ 47295000 (+) |
| G615247 | NA | non-coding | upstream | 122973 | 47284506 ~ 47284753 (+) |
| G615346 | LOC106582876 | non-coding | downstream | 24910 | 47433043 ~ 47484418 (+) |
| G615345 | NA | non-coding | downstream | 70675 | 47478808 ~ 47482671 (+) |
| G615439 | NA | non-coding | downstream | 129730 | 47537863 ~ 47538205 (+) |
| G615444 | NA | non-coding | downstream | 134099 | 47542232 ~ 47542487 (+) |
| G615340 | NA | non-coding | downstream | 136467 | 47544600 ~ 47544904 (+) |
| LOC110528958 | NA | other | upstream | 769772 | 46629591 ~ 46638492 (+) |
| G613664 | NA | other | upstream | 1128393 | 46278734 ~ 46279333 (+) |
| si:dkey-264d12.5 | LOC106582817 | other | upstream | 3379498 | 44002556 ~ 44035143 (+) |
| G610622 | NA | other | upstream | 3575846 | 43829004 ~ 43831880 (+) |
| G610563 | LOC106582806 | other | upstream | 3822830 | 43584020 ~ 43584896 (+) |
| G615624 | NA | other | downstream | 431255 | 47839388 ~ 47839722 (+) |
| G617133 | NA | other | downstream | 1418694 | 48826827 ~ 48827227 (+) |
| tafa4b | LOC106583040 | other | downstream | 2164187 | 49571790 ~ 49620194 (+) |
| G618712 | LOC106583033 | other | downstream | 2895297 | 50303430 ~ 50304232 (+) |
| LOC110527970 | LOC106583026 | other | downstream | 3552361 | 50960494 ~ 51079129 (+) |
