G615346 (LOC106582876)


Basic Information

Item Value
gene id G615346
gene name LOC106582876
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47433043 ~ 47484418 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU700297
CAGAAAACAGTAAAGAGTGAAAGATTGCTTAATATTGCTGAGTATAGAAAAAGCAAGTAATTCAATACACTTTCAAATATAATTAAAAGTGGCCAACAATATATTCCCTTTAAAGCTGTTAAAGGTTTCTGTTCCAGTAAACGCAGAACCATAAGTGAAAATCAGAACAGCAATATATATTTTTCGAAATGATTCAAAATAGAGGATCTCATATCAAACCACAGCCGCAGTTCAAGTAACACTaaactgcattttttttaaaaacattcagATAATCAAACATATTGCATTGTTTTTTGAGTTCACGTGTCAAACATTTCTCTTTttgtgttttttaaaataaaagcCTGTTAGGAGAGTAGACTCTGCATCCATCTTCCTTGACATGGAGGAAAGGCACAAATGTTTCAACAGCATCTGGGAAGCATCAATTGACAATACATAGAAAAACAGAGTTCCAGACGTGTAAACAGACCCCTAACATATACTGCTAATGAACGTACTTTTCTTTGAAAAGCTTGTCAATACAAATGAAAgaaagactgagactgagaccTAGAGGAGTAATACACACTAACCATGCACAGATGTCAGTCTCTTGGAAAAACATGTGGAATGTTACACATTTTCAGATTAGATGACTCAGAAAAAGGTAACTGTATGTCTAGAGCTAGAAGTCTATGTGACAAGGCCTTGGAAAATCGCTATAGAAATCTTAGTCAACATAATCATATTAGTATTATCATCACAAATTACCATATGATCATCTAAGAAATATACTGCATAGCCCAGTACGTTtctgcaacacacacaacacGCAGTGTTTCAGAGATTAGTGCCAAACGTTAAAGCTATACTTCCATtgactataatatatataatgcacCCGTATAAAGACTTAAATCTATGATCATTCTGTGAAAGGTGGCCTGCGTTGTCTGACTAGCTGCAGCAGCTTTTGCTTTTCTTGTATATTTATTTTGTTCATTGTAAGTTCAGTTACATACCGGCTGTATAGCCATTCAACAGACAAAAGCTTTTAAAAAATGCATAGACAACAGGAAAAGGTGCAACAAACATGTTTTGAAAGTCCACAAATATTTTAGAAATGTAAGATacagtaaatatatattttttggttttTAGAGGttatcaaatcatttttttaCATCACAAACTATGTGCCTTATATATTTAATAAAATATCCCTTTGGTACATTTTTGTTAGACAAACATGAGATCTGTAAAATGCATTCACTTGTGTACTTTAAGCTATAGAAATCCTGATTTTCAACTCtgttaaaaaaatacctaaattCAATAAAGCACCTGTTATGTAGTTCATGCCAATTTCACTAAATAGACAAGAACCTTCCCACAAAAGTTAAAGTGCACAAAGTATATACTCTACAATGAAGCAATAATATACTGTACTTAACTAAACCACCACTCTATTTCCTCTTTAATGTCTGTGCAGGGAAATCTTGGTTGAGTTGAGGCTTGCAAGAAAAAGTTTAAAAAAGATCAAATGTCCATAACCTAATTTTACTATGTTCCATTTGAAAATGATTGCATTTATCATTGATGGTGTGctgaaaaaagggggggggggggttctaaatTCAGGGACCAATATTAACTTGGTAAGGGAGGAAAGGATAGCCATTTACTTTGGACTAATGCATGATTCAGATCAAAGTCATTTTTTGTGAAACCGTTGGCTGTTTGTTTTAAAGCAGAGTCCAGTGCCATATGCAGTGTTCTAGCTCTTATTTTCCAGtgctcctcctcctttccccaaCCCTCTCATTACCCAACTCCCTGGTCTCGCTCTACCAGTTTGACCCCAGTATGTCCCTGCTACACGTCCTCCTCCATACTGAAGCTGCTCCCACGACTGCTGGTCTTTGAGGCACCTGGTGACACGAAAAACAGTGGGTCCACCCTCTCTGGGGACAGTGTGTACCCCTCGTCCATGATGATGTCCCCCAGCCCCACGTCTAGGTACAGCCCAGCATTAGAGGGGTCATCCAGCTCAGTGAAGCTTACACTGCCCAGGTCCAGGGGGCTGCTTATGGTCACAACCACAGGGGAGTCAGAGGAAGGTGGGGAGGATGTAAGGACAGGCTGTGCCATGGCTGCTGCCCCCAGGCTGAGAAAGGTTTGGGAGCAGGCCTCTCCAGCGCTGGGCCCCAGTTTATGGTCTCCCTGCTGAAGGtgctgctgctgaaggagggagGGGTCTGAACTCAGGCCATGGGACATCGGACTGGAGAGGCCATGGAGCTGAGCCTGCATCTCC
>TU700298
CAGAAAACAGTAAAGAGTGAAAGATTGCTTAATATTGCTGAGTATAGAAAAAGCAAGTAATTCAATACACTTTCAAATATAATTAAAAGTGGCCAACAATATATTCCCTTTAAAGCTGTTAAAGGTTTCTGTTCCAGTAAACGCAGAACCATAAGTGAAAATCAGAACAGCAATATATATTTTTCGAAATGATTCAAAATAGAGGATCTCATATCAAACCACAGCCGCAGTTCAAGTAACACTaaactgcattttttttaaaaacattcagATAATCAAACATATTGCATTGTTTTTTGAGTTCACGTGTCAAACATTTCTCTTTttgtgttttttaaaataaaagcCTGTTAGGAGAGTAGACTCTGCATCCATCTTCCTTGACATGGAGGAAAGGCACAAATGTTTCAACAGCATCTGGGAAGCATCAATTGACAATACATAGAAAAACAGAGTTCCAGACGTGTAAACAGACCCCTAACATATACTGCTAATGAACGTACTTTTCTTTGAAAAGCTTGTCAATACAAATGAAAgaaagactgagactgagaccTAGAGGAGTAATACACACTAACCATGCACAGATGTCAGTCTCTTGGAAAAACATGTGGAATGTTACACATTTTCAGATTAGATGACTCAGAAAAAGGTAACTGTATGTCTAGAGCTAGAAGTCTATGTGACAAGGCCTTGGAAAATCGCTATAGAAATCTTAGTCAACATAATCATATTAGTATTATCATCACAAATTACCATATGATCATCTAAGAAATATACTGCATAGCCCAGTACGTTtctgcaacacacacaacacGCAGTGTTTCAGAGATTAGTGCCAAACGTTAAAGCTATACTTCCATtgactataatatatataatgcacCCGTATAAAGACTTAAATCTATGATCATTCTGTGAAAGGTGGCCTGCGTTGTCTGACTAGCTGCAGCAGCTTTTGCTTTTCTTGTATATTTATTTTGTTCATTGTAAGTTCAGTTACATACCGGCTGTATAGCCATTCAACAGACAAAAGCTTTTAAAAAATGCATAGACAACAGGAAAAGGTGCAACAAACATGTTTTGAAAGTCCACAAATATTTTAGAAATGTAAGATacagtaaatatatattttttggttttTAGAGGttatcaaatcatttttttaCATCACAAACTATGTGCCTTATATATTTAATAAAATATCCCTTTGGTACATTTTTGTTAGACAAACATGAGATCTGTAAAATGCATTCACTTGTGTACTTTAAGCTATAGAAATCCTGATTTTCAACTCtgttaaaaaaatacctaaattCAATAAAGCACCTGTTATGTAGTTCATGCCAATTTCACTAAATAGACAAGAACCTTCCCACAAAAGTTAAAGTGCACAAAGTATATACTCTACAATGAAGCAATAATATACTGTACTTAACTAAACCACCACTCTATTTCCTCTTTAATGTCTGTGCAGGGAAATCTTGGTTGAGTTGAGGCTTGCAAGAAAAAGTTTAAAAAAGATCAAATGTCCATAACCTAATTTTACTATGTTCCATTTGAAAATGATTGCATTTATCATTGATGGTGTGctgaaaaaaggggggggggggggggggaataTGAATACTTTCTTTATAAAACACCATACTATGGTGGCTACTGCTACTTCCTAACATTGCGTACAGTGTTCAACCAAGGGTAAACAACAGACTGCTGCAACATGATTGGctgaagtacagttgaagtcggaagtttacatacagttaggttggagtcattaaaactcatttttcaaccactccacaaatttcttgttaacaaactatagttttggcaagtctgttaggacatctacttggtgcatgacacaagtaatttttccaacaattgtttacaaacatattatttcactgtatcacaattccagtgtgtaagaagcttacatacactacgttgactgtgcctttaaacagcttggaaaattccagaaaatgatgtcatggctttagaagcttctaataggctaattgacatcatttgagtcaattggaggtgtacctgtggatgtatttcaaggccaatcttcaaactcattgcctctttgcctgacatcatgggaaaatcaagagaaattagccaagacctcaatataaattgtagacctccacaagtctggttcatcctagggagcaatttccaaatgcctgaaggtaccacattcatctgtacaaacaatagtacgcaaatataaacaccatgggaccacacagccatcataccgctcagaaaggagatgcgttctgtctcctaaagatgaacgtactttggtgtgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaaaatgctggaggaaacaggtacaaaggtatctatatccacagttaaacgagtcctatatcaacataacctgaaaggccgctcagcaaggaagaagccactgctccaaaactgccatataaaagccagactacggtttgcaactccacatggggacaaatattttccttttggagaaatgtcctctggtctgatgaaacaaaaatagaactgtttggccataatgaccatcgttatgttaggaggaaaaagggggaggcttgcaagccgaaggacaccatcccaaccgtgaagcacaggggtggcagcatcatgctgtcggggtgctttgctgcaggagggactggtgcacttcacaaaatagatggcttcatgaggaaggaaaattatgtggatatattgaagcaacatctcaagatcagtcaggaagttaacgcttggtcacaaatgggtcttccaaatggacaatgacccaagcatacttccaaagttgtggcaaaattgcttaaggacaacaaagtcaaggtattggagtggcaatcacaaagccctgacctcaatcccatagataatttgtgggcagaactaaaaagtGTGAtccaagcaaggaggcctacaaatctgactcagttacaccgctctgtcaggaggaatgggccaaaattcacccaacttattgtgggaagcttgtggaaggctacccaaaacatttgacccaagttaaacaatttaaaggcaatgctaccacatactaattgagtgtatgtaaacttctgacccactgggaatgtgataaaataaataaaaagca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU700297 False 2302 lncRNA 0.39 2 47433043 47435366
TU700298 True 3188 lncRNA 0.37 3 47433043 47484418

Neighbor

gene id symbol gene type direction distance location
LOC110527889 LOC100380687 coding upstream 130948 47296738 ~ 47302095 (+)
sema3fb LOC106582865 coding upstream 403494 46936288 ~ 47029549 (+)
bhlhe40 LOC106582864 coding upstream 622581 46806447 ~ 46810462 (+)
itpr1b LOC106582863 coding upstream 632272 46660325 ~ 46800771 (+)
LOC118965406 NA coding upstream 798777 46634214 ~ 46634266 (+)
LOC110527899 LOC106582878 coding downstream 26582 47511000 ~ 47524578 (+)
LOC110527900 LOC106582882 coding downstream 44967 47529385 ~ 47535288 (+)
LOC110527907 LOC106582887 coding downstream 79646 47564064 ~ 47566159 (+)
si:ch211-232b12.5 LOC106582889 coding downstream 137053 47621471 ~ 47639848 (+)
LOC110527910 LOC106582895 coding downstream 227112 47711530 ~ 47715289 (+)
G615353 NA non-coding upstream 16043 47357958 ~ 47417000 (+)
G615347 LOC106582875 non-coding upstream 24910 47407726 ~ 47408133 (+)
G615354 LOC106582875 non-coding upstream 25751 47406768 ~ 47407292 (+)
G615357 LOC106582875 non-coding upstream 26430 47405921 ~ 47406613 (+)
G615439 NA non-coding downstream 53445 47537863 ~ 47538205 (+)
G615444 NA non-coding downstream 57814 47542232 ~ 47542487 (+)
G615340 NA non-coding downstream 60182 47544600 ~ 47544904 (+)
G615453 NA non-coding downstream 89720 47574138 ~ 47577040 (+)
G615338 NA non-coding downstream 156823 47641241 ~ 47642526 (+)
LOC110528958 NA other upstream 795089 46629591 ~ 46638492 (+)
G613664 NA other upstream 1153710 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 3404815 44002556 ~ 44035143 (+)
G610622 NA other upstream 3601163 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 3848147 43584020 ~ 43584896 (+)
G615624 NA other downstream 354970 47839388 ~ 47839722 (+)
G617133 NA other downstream 1342409 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 2087902 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 2819012 50303430 ~ 50304232 (+)
LOC110527970 LOC106583026 other downstream 3476076 50960494 ~ 51079129 (+)

Expression


Co-expression Network