G615345


Basic Information

Item Value
gene id G615345
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47478808 ~ 47482671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU700296
TGTAAAgcctacctgcctacctacctatctCCTCATCGAGCTCCTCCGTAAGATGCTGCATCGCTTCGAGGGTAAGTCTGGAATTCCGCTAGTTCTGAACTATTCGTGATTGGTAAAAGTTCACTACTAGCAGAACTCGGATTTGCCCCCGACTTTCTTCAAGAAATCTGACCAGAGGCGAAAATAACGCTCTTGTGTAAATTGGGATTTTGGCTAAATTCTTTGACAGATTTtgcagtagcctacagtacatggGGAAAACCAGgacctgagccctaggaccatgccccaggaatacctgacatgatgactccttgctgtccccagtccacctgactgtgctgctgctccagtttcaactattctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttgaccatgttttgttataatctccacccggcacagccagaagaggactggccaccccacatagcctggttcctctctaggtttctccctaggttttggcctttctagggagtttttcctagccaccgtgcttcttcacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaaatacatttgattgatatgaGAGGGGACAGAGTGGGAGAGTTTCCAAGTTATCTGAAGTCACCTAAACTATATAACTACCACTACTCCCCCTATCATTAGCTGGTTGAATTAACTCTGTAAAAATGAATACCCTTCCGAAAATCTCCTACTTTTTTTCAATGTATAAAAAAGCTTGATGGGATTATCTCAGGGTTCCCTTGGAATAAACAAAATTCAAGGATCCGCAAGGTGTACTTGTAGCCAAAGGGCCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU700296 True 890 lncRNA 0.44 3 47478808 47482671

Neighbor

gene id symbol gene type direction distance location
LOC110527889 LOC100380687 coding upstream 176713 47296738 ~ 47302095 (+)
sema3fb LOC106582865 coding upstream 449259 46936288 ~ 47029549 (+)
bhlhe40 LOC106582864 coding upstream 668346 46806447 ~ 46810462 (+)
itpr1b LOC106582863 coding upstream 678037 46660325 ~ 46800771 (+)
LOC118965406 NA coding upstream 844542 46634214 ~ 46634266 (+)
LOC110527899 LOC106582878 coding downstream 28329 47511000 ~ 47524578 (+)
LOC110527900 LOC106582882 coding downstream 46714 47529385 ~ 47535288 (+)
LOC110527907 LOC106582887 coding downstream 81393 47564064 ~ 47566159 (+)
si:ch211-232b12.5 LOC106582889 coding downstream 138800 47621471 ~ 47639848 (+)
LOC110527910 LOC106582895 coding downstream 228859 47711530 ~ 47715289 (+)
G615353 NA non-coding upstream 61808 47357958 ~ 47417000 (+)
G615347 LOC106582875 non-coding upstream 70675 47407726 ~ 47408133 (+)
G615354 LOC106582875 non-coding upstream 71516 47406768 ~ 47407292 (+)
G615357 LOC106582875 non-coding upstream 72195 47405921 ~ 47406613 (+)
G615439 NA non-coding downstream 55192 47537863 ~ 47538205 (+)
G615444 NA non-coding downstream 59561 47542232 ~ 47542487 (+)
G615340 NA non-coding downstream 61929 47544600 ~ 47544904 (+)
G615453 NA non-coding downstream 91467 47574138 ~ 47577040 (+)
G615338 NA non-coding downstream 158570 47641241 ~ 47642526 (+)
LOC110528958 NA other upstream 840854 46629591 ~ 46638492 (+)
G613664 NA other upstream 1199475 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 3450580 44002556 ~ 44035143 (+)
G610622 NA other upstream 3646928 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 3893912 43584020 ~ 43584896 (+)
G615624 NA other downstream 356717 47839388 ~ 47839722 (+)
G617133 NA other downstream 1344156 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 2089649 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 2820759 50303430 ~ 50304232 (+)
LOC110527970 LOC106583026 other downstream 3477823 50960494 ~ 51079129 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004150 NA non-coding NC_007122.7 CM002895.2 25475305 ~ 25476980 (-)