G615652


Basic Information

Item Value
gene id G615652
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47881622 ~ 47883457 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU700659
ATAACAGAGGGTATGTTCACATAATACACAACACAAACAATGAGTGGTTGAATCAGTACTATTTTCAAAGGCAAGCTTGCAGGAGGGAAATTATGAGTAGTTACAAAATCAAAAAGGTTCATCTTTATCATGGATCATTTGAAAATACAGCCAGAGTTACTGTTACTATTTACAAGCATTATTTACACAGGAAAGCTTCCAGGGAGTGTCTTATCTACATCGTCAGTTTACTATATCATAGTTTGGATGCATGTGAAATTCAGACCTTCAGTTACCGAGGGAAGCAGAGAGCAGTTATCACTACACCCGTTTTAACAGAACACCTGAGCCAAAATATCTATGGTGAAAAGAAGTGATAGTGTTACTACTTTACACATGTGTTTATGCCTCTTTCAATATTGGTgtattgcaacaaaaaaaacattatttttggcAACGCACTAGATAAATGCAGTGAAacgtgttttacagggtcagccatagtagtacggcaaccctggagcaaattaggattaagtgccttgctcaagggcacgtcaacagatttttcacctagtcagctcaggcatTCCAAGCAGCGACctttccggttactggcccaacgctctaactgctaggctacctgctgccgaATAGATCTCccatacacacagtacatacatgtACCAGAATACATTTATAACATCCTCCATCAGCAGTTGAAAATCAGAGGGTTGTTATTGCACAACACACACTGTTGAGGAGACCACTAAAACGGGCATTTTACACAAGCTCCAAAACACATGGTCTTATTGCTTCCAGTTTGTACTTTGAAATGTACGCTCTGACTGTGGCTCTACTGTAGTCAGACTATAGACGGTGGCTCTATATCAAAATGGCTGTGgaataacttttttttatttttagataaAATCACCAACATAGCAGTGAGACTGATGCAGTCTTGTTGATAGAACTACTAAAAACATCACAGGCACGCTCATTTTTAAATTAGAACTGGAGGCTGAGTCTCTAGAactcaaacacacagacacacatacatacaagaGGCCAAATAGATATAAGGAGGGGACCCTGGGTCTGTTTCCTGATGACAATGTCCATCCTGTACAAACCATATGAGACTCCTCCTGCACAGCCCATATCCAGCAAAGAAACAATGGCACGTCACATTCAGTTATAAATGTAGGAGGAAAATCTGATTTTACATGCAGTTAAAACAAAGTCATCCAAATGAACTGGATAAAAAGCGGTCCCTATGATGTAAAGTCATTTGTAGTCTTTTTGTGTGCAATAATTGTGGGGTTTCCATCACATATCACACACAATGTCACCTATGCAGTAGGCACAGATGTATTGTTCTGCAGTCAGAAAGTAGAACAGAGGATGGGTCCACTGTCAAGTGACGGTGTTACGTACAGTACTCAGTGGTGAAACATCTGGATTCTCTTATCTTCTTATGACCCTGCCTTTGAAGACATAACTGATCAACTCTGGTATTGTTACAGTAtgatttccagtgtgtgtgtgtgttttgtgataGGTCAATGGAGTGGGGCGGGCTTCGCAGAGCGAATCTCTCAGTGACACTGGGGCACGTGGTGTCAAGGGAGTCAGTCTACACAACGCCCTCAATGAAACTGGTGTCCAGGTGAACAATGAGCATGCGCAGGAAAGACATCTCCTTGCGTGTGTTCTCAAAGATGATTCGTGGGTCATCAGACTGGCAGCGGAGGCAGTTGGGGGCCATCACCATGGCAAGGTTATTGACATCCATCTTAGTAACAGACACATTAGCAGGCTGAGCAAAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU700659 True 1811 lncRNA 0.42 2 47881622 47883457

Neighbor

gene id symbol gene type direction distance location
LOC110527911 NA coding upstream 107404 47755267 ~ 47774218 (+)
LOC110527910 LOC106582895 coding upstream 166333 47711530 ~ 47715289 (+)
si:ch211-232b12.5 LOC106582889 coding upstream 241774 47621471 ~ 47639848 (+)
LOC110527907 LOC106582887 coding upstream 315463 47564064 ~ 47566159 (+)
LOC110527900 LOC106582882 coding upstream 346334 47529385 ~ 47535288 (+)
LOC118965382 NA coding downstream 138032 48021489 ~ 48022175 (+)
LOC110527919 LOC106565791 coding downstream 183466 48066923 ~ 48068196 (+)
LOC110527921 LOC106582906 coding downstream 244503 48127960 ~ 48168204 (+)
LOC110510677 LOC100136421 coding downstream 313326 48196782 ~ 48214546 (+)
LOC110527924 kcnkf coding downstream 394224 48277681 ~ 48282177 (+)
G615580 NA non-coding upstream 117604 47763315 ~ 47764018 (+)
G615338 NA non-coding upstream 239096 47641241 ~ 47642526 (+)
G615453 NA non-coding upstream 304582 47574138 ~ 47577040 (+)
G615340 NA non-coding upstream 336718 47544600 ~ 47544904 (+)
G615444 NA non-coding upstream 339135 47542232 ~ 47542487 (+)
G615748 NA non-coding downstream 126413 48009870 ~ 48010082 (+)
G615770 NA non-coding downstream 162171 48045628 ~ 48045973 (+)
G615771 NA non-coding downstream 162584 48046041 ~ 48046339 (+)
G615774 NA non-coding downstream 166296 48049753 ~ 48049968 (+)
G615784 NA non-coding downstream 174685 48058142 ~ 48058351 (+)
G615624 NA other upstream 41900 47839388 ~ 47839722 (+)
LOC110528958 NA other upstream 1243668 46629591 ~ 46638492 (+)
G613664 NA other upstream 1602289 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 3853394 44002556 ~ 44035143 (+)
G610622 NA other upstream 4049742 43829004 ~ 43831880 (+)
G617133 NA other downstream 943370 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 1688863 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 2419973 50303430 ~ 50304232 (+)
LOC110527970 LOC106583026 other downstream 3077037 50960494 ~ 51079129 (+)
G621650 NA other downstream 4507891 52391348 ~ 52391633 (+)

Expression


Co-expression Network