XLOC_002541 (snx30)


Basic Information

Item Value
gene id XLOC_002541
gene name snx30
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4940767 ~ 4961929 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004727
GTGTTCCGGTTCTGCGCGGTGTCCGTCAGCTGACAGATGTTTGGCTCCTCGGTTCGGTTCGTGCGGCAGTGAAATAAAAACAGCTGCGCGATCAGAGCAGTGCAGCGCCATGAGCAACGGCGGTACCCCGCGATCACTGCCCTCCTCCGGGCAGAAGTCCATCCAGGAGATCTGCCACCCTCTGTCCGCCGAGGAGAGCGCACGGAGCCGCAGCCCAGATGTGCTGAACCCCGGAGAGAAGGACCTGAGTCTGCCCAATGGGACTCCAGTAGACACATCAAGCCCCGCCTCCTCTTCATCGCTACTAAACCGACTGCAGCTCGACGACGATTTGGACGCAGAAACGCGCGACCTGTTTGTGACTGTAGATGATCCTAAAAAGCACGTGTCTACAATGGAGACGTACATCACCTACAGAGTCTGCACAAAGACCACCAGAACAGAATTTGACCTGCCGGAGTACTCGGTAAGGCGACGCTACCAGGACTTTGATTGGCTGAGGATAAAATTAGAGGACAGTCAACCAACACACCTTATTCCACCTTTACCTGAGAAGTTTGTAATGAAGGGAGTGGTGGACCGGTTTTCAGAGGAGTTTGTGGAGACGAGGAGAAAAGCGCTAGACAAGTTCCTCAAACGTGTAGCAGATCATCCGGTGCTCTCCTTCAACGAACACTTCAACGCTTTTCTCTCAGCAAAGGACCTGAATAAGCGTCAGGGTCTTGCTCTGCTGACTAAAATGGGGGAATCTGTGAAGTACGTGACGGGTGGTTATAAACTGAGAGGACGGCCGGTGGAGTTTGCTGCTATGGGGGAATATCTGGACATGTTCACACAGAAACTGGGCACCATTGACAGGATAGCACAAAGAATCATTAAAGAACAGACAGAGTTCCTGATGGAGTTGAGAGAGTACGGGCCGGTCTACTCATCCTGGTCTTCTTTCGAGGAGGATCTCCATGAGCCTTTGGAAGGGGTTTCAGGCTGTGTGTCCAACTGCTCCAGCGCTCTGGAGGAGCTCACAGAGGACATGAGTGAAGACTTTCTCCCCGTTCTCAGAGAATACGTCCTCTATATCGAATCCATGAAGAATGTGCTTAAAAAGAGAGACCAAGTCCAGGCTGAATACGAAACAAAACTGGAGGCTGTTGTTTTCAGAGAGGAAAAAAAGACGCCGATGCCCACTGATGTGGAGAAGTGCCAAGATCGAGTAGAGTGCTTTAATGCTGACCTGAAAGCCGATTGGGACCGCTGGCAGAACAACAAGCGACAGGATTTTCGACAGCTGCTGACGGGGATGGCTGACAAAAACATCCAGTACTACGAGAAGTGCCTTGCAGCTTGGGAGTCTCTCATTCCACTATTACAAGACAAACAGGACGCTAAAGGTGAAACGAACTGAGCACGAACTTCACCCATTCTCAATCCGAGCTTCAGAGCTCGCGATCCTCAAACAGGCCGTCCAACATGATGGGACGCACAAGGACGGGACACTACTGGACTGGACAAACTACTAGAAATCCATTTTGTAAGGTGTCTCTATTTGTAAAAGCCCATGGTTCTCTCTCTTGTTTTCCCGCTCTTTTTTTGTGGAAGGAGAATTTGTAGTTTTCTCTTCTCAAACTTGGGAGTAAAACTGCAAAAACGTGACTCTGAAGCGGACAAGAGGATGACAGAGCGACGGAAAACCTTTGGTAACGTCAACACATCTGTAGTTTTTAGTGAAATGTTTGCAAGTAATCCTTTTGTAAATGCTTGTTTGTTGCTGCCCATCCGAGGCAACAGAGACATCAGtgattcttttgttttgtttgttgttgttttgtttttgttcgcCGAAGGTTTGCCAACATTCCTCTTGCCAAAGACGTGGACCTGAAgtttgatatcttttttttttctccagacgATTTCTTGGCACCAGGATCCCCCGTTATTATCAAAATGTGGCTGTTACATTGAAATGAAGGATGATTTTTTTCCCTCAGCCGTACTTTGACCTCATTAAATATTTATG
>TCONS_00004728
CCGGTTGTGTTCCGGTTCTGCGCGGTGTCCGTCAGCTGACAGATGTTTGGCTCCTCGGTTCGGTTCGTGCGGCAGTGAAATAAAAACAGCTGCGCGATCAGAGCAGTGCAGCGCCATGAGCAACGGCGGTACCCCGCGATCACTGCCCTCCTCCGGGCAGAAGTCCATCCAGGAGATCTGCCACCCTCTGTCCGCCGAGGAGAGCGCACGGAGCCGCAGCCCAGATGTGCTGAACCCCGGAGAGAAGGACCTGAGTCTGCCCAATGGGACTCCAGTAGACACATCAAGCCCCGCCTCCTCTTCATCGCTACTAAACCGACTGCAGCTCGACGACGATTTGGACGCAGAAACGCGCGACCTGTTTGTGACTGTAGATGATCCTAAAAAGCACGTGTCTACAATGGAGACGTACATCACCTACAGAGTCTGCACAAAGACCACCAGAACAGAATTTGACCTGCCGGAGTACTCGGTAAGGCGACGCTACCAGGACTTTGATTGGCTGAGGATAAAATTAGAGGACAGTCAACCAACACACCTTATTCCACCTTTACCTGAGAAGTTTGTAATGAAGGGAGTGGTGGACCGGTTTTCAGAGGAGTTTGTGGAGACGAGGAGAAAAGCGCTAGACAAGTTCCTCAAACGTGTAGCAGATCATCCGGTGCTCTCCTTCAACGAACACTTCAACGCTTTTCTCTCAGCAAAGGACCTGAATAAGCGTCAGGGTCTTGCTCTGCTGACTAAAATGGGGGAATCTGTGAAGTACGTGACGGGTGGTTATAAACTGAGAGGACGGCCGGTGGAGTTTGCTGCTATGGGGGAATATCTGGACATGTTCACACAGAAACTGGGCACCATTGACAGGATAGCACAAAGAATCATTAAAGAACAGACAG

Function

symbol description
snx30 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport. Orthologous to human SNX30 (sorting nexin family member 30).

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-330 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport. Orthologous to human SNX30 (sorting nexin family member 30).

Ensembl:

ensembl_id ENSDARG00000069601

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004727 False 2017 mRNA 0.48 9 4940767 4961923
TCONS_00004728 True 896 mRNA 0.53 5 4953352 4961929

Neighbor

gene id symbol gene type direction distance location
XLOC_002540 NA coding downstream 18716 4919323 ~ 4922051 (-)
XLOC_002539 NA coding downstream 122161 4812304 ~ 4818606 (-)
XLOC_002538 NA coding downstream 357747 4573554 ~ 4583020 (-)
XLOC_002537 NA coding downstream 362915 4508389 ~ 4577852 (-)
XLOC_002536 CABZ01073795.1 coding downstream 565577 4367430 ~ 4375190 (-)
XLOC_002542 mat2al coding upstream 7705 4969634 ~ 4980150 (-)
XLOC_002543 hnrnpd coding upstream 38694 5000623 ~ 5024520 (-)
XLOC_002544 tmem150c coding upstream 80048 5041977 ~ 5058823 (-)
XLOC_002545 sec31a coding upstream 130582 5092511 ~ 5135788 (-)
XLOC_002546 NA coding upstream 259986 5221915 ~ 5223942 (-)
XLOC_002534 NA non-coding downstream 841584 4095871 ~ 4099183 (-)
XLOC_002547 CU466285.1 non-coding upstream 563464 5525393 ~ 5527364 (-)
XLOC_002550 NA non-coding upstream 826691 5788620 ~ 5821584 (-)
XLOC_002554 CABZ01032180.1 non-coding upstream 988534 5950463 ~ 5950578 (-)
XLOC_002555 NA non-coding upstream 1074952 6036881 ~ 6037746 (-)

Expression


Co-expression Network