Fish Transcriptome and Expression Database

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model fish

XLOC_025410 (BX005369.1)

Basic Information

Item	Value
gene id	XLOC_025410
gene name	BX005369.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007114.7
NCBI id	CM002887.2
chromosome length	62628489
location	29167020 ~ 29167147 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050129
gccggcagctagctctctgtaaCTCTTACATGGTTGTAGCAAATACTGTAGGTCTGAAGCTTAGCAGgcctgcgcccggtcagtacctggatgggagaccacaatggaaagctaggttgctgccagga

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000083676

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00050129	True	128	rRNA	0.54	1	29167020	29167147

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_025408	lgals2a	coding	upstream	205502	28953274 ~ 28961518 (+)
XLOC_025407	lgals1l1	coding	upstream	220264	28939759 ~ 28946756 (+)
XLOC_025406	NA	coding	upstream	240945	28899129 ~ 28926075 (+)
XLOC_025405	alg1	coding	upstream	297380	28860283 ~ 28869640 (+)
XLOC_025404	flr	coding	upstream	313085	28831450 ~ 28853935 (+)
XLOC_025411	NA	coding	downstream	226318	29393465 ~ 29398151 (+)
XLOC_025412	BX649558.1	coding	downstream	238866	29406013 ~ 29409959 (+)
XLOC_025413	grap2a	coding	downstream	278326	29445473 ~ 29468859 (+)
XLOC_025414	fam83fa	coding	downstream	302136	29469283 ~ 29486498 (+)
XLOC_025415	rac2	coding	downstream	343671	29510818 ~ 29544039 (+)
XLOC_025429	BX649540.1	misc	downstream	1081592	30248739 ~ 30249036 (+)
XLOC_025403	NA	non-coding	upstream	383263	28765693 ~ 28783757 (+)
XLOC_025402	NA	non-coding	upstream	433255	28649947 ~ 28733765 (+)
XLOC_025393	NA	non-coding	upstream	1565547	27594373 ~ 27601473 (+)
XLOC_025392	BX000529.1	non-coding	upstream	1759809	27407096 ~ 27407211 (+)
XLOC_025417	NA	non-coding	downstream	472837	29639984 ~ 29640294 (+)
XLOC_025419	CT573429.1	non-coding	downstream	497210	29664357 ~ 29671653 (+)
XLOC_025420	NA	non-coding	downstream	520402	29687549 ~ 29710222 (+)
XLOC_025391	NA	non-coding	upstream	1672215	27346839 ~ 27494805 (+)

Expression

Co-expression Network