G616545


Basic Information

Item Value
gene id G616545
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48390897 ~ 48391124 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU701625
ATTTTATATGATACCCATTAAGGACGAGACTGGCGAGGCCACCTCCAAGGCGATGATGGACATCTTCAACACCCACGGTTCTCCTGAGGTCATCTTGAGTGACCGAGGTCATGAACGCTGGAACAAGGTTCAGATGTTATAAGTTATATTCTGTCACCAATGGTTTGTTTtattactttaaagtactacttaagtaaatggtgctgtctggtttgctaaatataagga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU701625 True 228 lncRNA 0.41 1 48390897 48391124

Neighbor

gene id symbol gene type direction distance location
LOC110527924 kcnkf coding upstream 108720 48277681 ~ 48282177 (+)
LOC110510677 LOC100136421 coding upstream 176351 48196782 ~ 48214546 (+)
LOC110527921 LOC106582906 coding upstream 222693 48127960 ~ 48168204 (+)
LOC110527919 LOC106565791 coding upstream 322701 48066923 ~ 48068196 (+)
LOC118965382 NA coding upstream 368722 48021489 ~ 48022175 (+)
LOC110527925 LOC106582912 coding downstream 79563 48470687 ~ 48714043 (+)
lsm14b LOC106582791 coding downstream 346147 48737271 ~ 48740708 (+)
LOC110527931 LOC106582916 coding downstream 444070 48835194 ~ 48845739 (+)
LOC110527932 LOC106582918 coding downstream 470701 48861825 ~ 48874455 (+)
cidec cidec coding downstream 494085 48885209 ~ 48896546 (+)
G616533 NA non-coding upstream 9539 48381122 ~ 48381358 (+)
G615875 NA non-coding upstream 170521 48219727 ~ 48220376 (+)
G615855 NA non-coding upstream 207602 48183096 ~ 48183295 (+)
G615848 NA non-coding upstream 213327 48177368 ~ 48177570 (+)
G616550 NA non-coding downstream 4367 48395491 ~ 48395723 (+)
G616560 NA non-coding downstream 9117 48400241 ~ 48400505 (+)
G616579 NA non-coding downstream 18185 48409309 ~ 48409526 (+)
G616603 NA non-coding downstream 33139 48424263 ~ 48424727 (+)
G616607 NA non-coding downstream 35740 48426864 ~ 48427068 (+)
G615624 NA other upstream 551175 47839388 ~ 47839722 (+)
LOC110528958 NA other upstream 1752943 46629591 ~ 46638492 (+)
G613664 NA other upstream 2111564 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 4362669 44002556 ~ 44035143 (+)
G610622 NA other upstream 4559017 43829004 ~ 43831880 (+)
G617133 NA other downstream 435703 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 1181196 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 1912306 50303430 ~ 50304232 (+)
LOC110527970 LOC106583026 other downstream 2569370 50960494 ~ 51079129 (+)
G621650 NA other downstream 4000224 52391348 ~ 52391633 (+)

Expression


Co-expression Network