G616550


Basic Information

Item Value
gene id G616550
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48395491 ~ 48395723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU701630
gccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctgaaatggctttcttcttgccactcttccagaaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcaggtcatccagagt

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU701630 True 233 lncRNA 0.44 1 48395491 48395723

Neighbor

gene id symbol gene type direction distance location
LOC110527924 kcnkf coding upstream 113314 48277681 ~ 48282177 (+)
LOC110510677 LOC100136421 coding upstream 180945 48196782 ~ 48214546 (+)
LOC110527921 LOC106582906 coding upstream 227287 48127960 ~ 48168204 (+)
LOC110527919 LOC106565791 coding upstream 327295 48066923 ~ 48068196 (+)
LOC118965382 NA coding upstream 373316 48021489 ~ 48022175 (+)
LOC110527925 LOC106582912 coding downstream 74964 48470687 ~ 48714043 (+)
lsm14b LOC106582791 coding downstream 341548 48737271 ~ 48740708 (+)
LOC110527931 LOC106582916 coding downstream 439471 48835194 ~ 48845739 (+)
LOC110527932 LOC106582918 coding downstream 466102 48861825 ~ 48874455 (+)
cidec cidec coding downstream 489486 48885209 ~ 48896546 (+)
G616545 NA non-coding upstream 4367 48390897 ~ 48391124 (+)
G616533 NA non-coding upstream 14133 48381122 ~ 48381358 (+)
G615875 NA non-coding upstream 175115 48219727 ~ 48220376 (+)
G615855 NA non-coding upstream 212196 48183096 ~ 48183295 (+)
G616560 NA non-coding downstream 4518 48400241 ~ 48400505 (+)
G616579 NA non-coding downstream 13586 48409309 ~ 48409526 (+)
G616603 NA non-coding downstream 28540 48424263 ~ 48424727 (+)
G616607 NA non-coding downstream 31141 48426864 ~ 48427068 (+)
G616643 NA non-coding downstream 68982 48464705 ~ 48464938 (+)
G615624 NA other upstream 555769 47839388 ~ 47839722 (+)
LOC110528958 NA other upstream 1757537 46629591 ~ 46638492 (+)
G613664 NA other upstream 2116158 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 4367263 44002556 ~ 44035143 (+)
G610622 NA other upstream 4563611 43829004 ~ 43831880 (+)
G617133 NA other downstream 431104 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 1176597 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 1907707 50303430 ~ 50304232 (+)
LOC110527970 LOC106583026 other downstream 2564771 50960494 ~ 51079129 (+)
G621650 NA other downstream 3995625 52391348 ~ 52391633 (+)

Expression


Co-expression Network