G616660


Basic Information

Item Value
gene id G616660
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48468950 ~ 48469354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU701740
tttcatcagctgtccgggtggctggtctcagaaaatcccgcaggtgaagaagctagatgtggaggtcctgggctggcgtggtaacacgtggtctgcggttgtgaggccggttggacgtactgccaaattctcaaaaacgacattggaggcggcttatggtagaaaaagtaacattcaattatctggcaacagctctggtggacattcctgcagacatctgtggcattgtattgtgtcaCAAAActgccttttattgttcccagcacaaggtgcacctgtgtaatgatcatgctgtttaatctgctACTTCATGTGCCAcacctgaatactttctgaatgcactatacatacgcacacacatacacgcaacaCACACGAAtaccgacacaacacaaacatagacac

Function

NR:

description
NEDD8-conjugating enzyme UBE2F-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU701740 True 405 lncRNA 0.47 1 48468950 48469354

Neighbor

gene id symbol gene type direction distance location
LOC110527924 kcnkf coding upstream 186773 48277681 ~ 48282177 (+)
LOC110510677 LOC100136421 coding upstream 254404 48196782 ~ 48214546 (+)
LOC110527921 LOC106582906 coding upstream 300746 48127960 ~ 48168204 (+)
LOC110527919 LOC106565791 coding upstream 400754 48066923 ~ 48068196 (+)
LOC118965382 NA coding upstream 446775 48021489 ~ 48022175 (+)
LOC110527925 LOC106582912 coding downstream 1333 48470687 ~ 48714043 (+)
lsm14b LOC106582791 coding downstream 267917 48737271 ~ 48740708 (+)
LOC110527931 LOC106582916 coding downstream 365840 48835194 ~ 48845739 (+)
LOC110527932 LOC106582918 coding downstream 392471 48861825 ~ 48874455 (+)
cidec cidec coding downstream 415855 48885209 ~ 48896546 (+)
G616643 NA non-coding upstream 4012 48464705 ~ 48464938 (+)
G616607 NA non-coding upstream 41882 48426864 ~ 48427068 (+)
G616603 NA non-coding upstream 44223 48424263 ~ 48424727 (+)
G616579 NA non-coding upstream 59424 48409309 ~ 48409526 (+)
G616560 NA non-coding upstream 68445 48400241 ~ 48400505 (+)
G616719 NA non-coding downstream 70559 48539913 ~ 48587831 (+)
G616834 NA non-coding downstream 245118 48714472 ~ 48714693 (+)
G617119 NA non-coding downstream 342004 48811358 ~ 48811629 (+)
G617122 NA non-coding downstream 343665 48813019 ~ 48813288 (+)
G617126 NA non-coding downstream 348698 48818052 ~ 48818306 (+)
G615624 NA other upstream 629228 47839388 ~ 47839722 (+)
LOC110528958 NA other upstream 1830996 46629591 ~ 46638492 (+)
G613664 NA other upstream 2189617 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 4440722 44002556 ~ 44035143 (+)
G610622 NA other upstream 4637070 43829004 ~ 43831880 (+)
G617133 NA other downstream 357473 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 1102966 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 1834076 50303430 ~ 50304232 (+)
LOC110527970 LOC106583026 other downstream 2491140 50960494 ~ 51079129 (+)
G621650 NA other downstream 3921994 52391348 ~ 52391633 (+)

Expression


Co-expression Network