XLOC_025416 (sstr3)


Basic Information

Item Value
gene id XLOC_025416
gene name sstr3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29600917 ~ 29602479 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050141
GTCATAGTTTGTGGTTGTTCTCTGTGCAGGACAATGGCCCCTAGCTGAAGGCAGTGACGGCATAAGAGTGAGATGGAGCTGACCTCAGTAGACGCCTCCGCAGCACTGGACATATGGAGCAATGGCTCCATTCCTGGTTTTCTTCTCAACGAGAGCATTCTCAATGACACCTGCTTCCTCAATGTTTCGAACTGCACCAATGGGACAGATGCGGGCAACCGAACAGAAACAAGCATGGCAGGAATCCTCATCCCTCTCATTTATATCATCGTCTGCATCGTTGGCCTGGGAGGAAACTCTTTAGTCATTCACATTGTCCTGCACTACTCTAAGACTGAGTCGGTGACCAATATCTACATTCTGAATCTAGCTATAGCTGATGAGCTCTTCATGCTGGGCCTTCCGTTCCTCGCCGTACAGAATGCCATGCATTCCTGGCCCTTCGGCTCATTTACGTGCCGGCTCGTCATGACTGTTGATGGCATTAATCAGTTCACCAGCATTTTCTGCCTCACCGTGATGAGCATCGATCGATACCTGGCTGTGGTTCACCCTATTCGTTCCTCTAAATGGAGGCGACCTCAAGTAGCCAAGGCTGTGAATGGAACGATCTGGGCAGTATCTTTTCTAGTGGTCTTACCTGTGGTGATTTTCGCAAGTGTTCAACGGGAAGGTGGAATCTGCAACATAATATGGCCGAAGCCAGCCAATGTTTGGGCAGCAGCATTCATCATCTACACCTCCACAGTTGGCTTTTTCTTTCCCTTGCTGGTCATCTGCATGTgctatctgctcattgtaattaaGATCCGCAGCTCGGGAAAGAAGGTTCACGCAACATCCACCAAACGCCGTAAGTCGGAGCGGAAGGTCACTCGAATGGTAGTGATTGTCGTGGCTGTGTTCGTGTTCTGCTGGATGCCGTTTTACGCCCTCAATATAATAAACCTTGTGGAGTCGCTGCGTGATGAACCACAAGGCCTGCATCTTTTCGTTGTGGTGTTGTCTTATGCTAACAGCTGCGCTAACCCTATCGTTTACGGCTTCCTTTCGGACAACTTCAAGAGAGGTTTCCGGAAGGCCTTGTGTCGCTCTTCTCGAAGGGTCGAAAACCACGAGCCCACCGAGCAGCAGCAGCATCAAGAAGAGCGAAGACGAGTGCTGATGCCAAGGGAAAGCCTTAGAAGAGCAGTTAGAGATGAAGAAGACGAGGAGGAAGAAGAATACAGGGAAGAAGTGACAGAAATGACGGAAATCTGCAGGATTACTCAGAATGGAAATGGAAGCGGACAGCCTGAAAGTACCCGAGCGCTTTTCTTAGAGAGACCCTCGGGCACAGGGGTTTCAGAGGTCTGTTCCCCTGACAGGAGAGGTGCGTGCGGGGATGTGGTTGGTAAAGGACCAGGCTTTGGACCTGCTGCAACCCTGTTGAATGGGGCTAAAAATGGCAATGTGAAAACTCTGCCAGAGGAACCGGTGGAAAAGAACAGCTCCCTGGAGATCAGCTACTTGTAAACCTTGTGAGTTGTGACAGCTGGATAAACAGTGTTATTGTACATGCCT

Function

symbol description
sstr3 Predicted to enable G protein-coupled receptor activity and neuropeptide binding activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human SSTR3 (somatostatin receptor 3).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0042277 peptide binding molecular_function
GO:0004994 somatostatin receptor activity molecular_function
GO:0042923 neuropeptide binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04935 Growth hormone synthesis, secretion and action
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-061009-35 Predicted to enable G protein-coupled receptor activity and neuropeptide binding activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human SSTR3 (somatostatin receptor 3).

Ensembl:

ensembl_id ENSDARG00000014477

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050141 True 1563 mRNA 0.50 1 29600917 29602479

Neighbor

gene id symbol gene type direction distance location
XLOC_025415 rac2 coding upstream 56878 29510818 ~ 29544039 (+)
XLOC_025414 fam83fa coding upstream 114419 29469283 ~ 29486498 (+)
XLOC_025413 grap2a coding upstream 132058 29445473 ~ 29468859 (+)
XLOC_025412 BX649558.1 coding upstream 190958 29406013 ~ 29409959 (+)
XLOC_025411 NA coding upstream 202766 29393465 ~ 29398151 (+)
XLOC_025417 NA coding downstream 37505 29639984 ~ 29640294 (+)
XLOC_025418 eif3d coding downstream 38358 29640837 ~ 29654925 (+)
XLOC_025419 CT573429.1 coding downstream 61878 29664357 ~ 29671653 (+)
XLOC_025420 NA coding downstream 85070 29687549 ~ 29710222 (+)
XLOC_025421 cacng2a coding downstream 112296 29714775 ~ 29845175 (+)
XLOC_025429 BX649540.1 misc downstream 646260 30248739 ~ 30249036 (+)
XLOC_025410 BX005369.1 non-coding upstream 433770 29167020 ~ 29167147 (+)
XLOC_025406 NA non-coding upstream 674842 28899129 ~ 28926075 (+)
XLOC_025403 NA non-coding upstream 817160 28765693 ~ 28783757 (+)
XLOC_025423 NA non-coding downstream 311965 29914444 ~ 29915357 (+)
XLOC_025424 BX901883.3 non-coding downstream 327103 29929582 ~ 29929887 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_02013637_02015088 SSTR3 coding CI01000069 null 2013637 ~ 2016746 (+)