G617517 (LOC106582920)


Basic Information

Item Value
gene id G617517
gene name LOC106582920
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48959418 ~ 48960604 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU702683
CCTGTATGTAATGTAATTGCTATCTGAATATAacatagtcaaTTCTAAGAAAAGAGGGTGGAAAAATAAACTGGTTTAGGAGAAAAATGGAAGATGAGATTATGttttctctttcctctcatcAACTTTAATAGTTCACACACATAcatcagttcctctttgcttttTCAAGTACATCTGCCCGATCAGTAGCACACATAAAAatcagtgcatgtgtgtgtatgcttgcatAAGCCAGGCACCTTTGGACAGTTGGAATCCATGCTTGCAGTCTTGGACTTCATTTCAAACCTCCTTGTGTTGCTTTTTCTCTAAATAAATAACTGGGTAAAATAACCAACTTCGTAATAGGTAACAGAGTAAGCAGATAATGGCGACAACTCACTGAGTCAACTAAAAAAGATTGCAAATGTCTCTTCAAATGTAACCTTCATGGCCCTTTGTATCCCTTGTGGATACAAACAAAAACACCCAAATGAAGGACTCCTGTGGAAAAACTGGCAACAGCAATGTTCAGTGTGCCCCTATGGCCAGCCTCTGTAGTCCAGTGTGCTGCTTCTTCTATGAGTccaaaagagagaagagaaactatgtgtgtgtgttttagtctgTGCAGTGGTCCTCCAGCTGGGATATGATGGTGATGAGGTTCTGCAGACCGAAGATGTAGCCACTGTCCTGGCCCTCGTGCACCACACTGTCCTCCACATAGTCAGGGAACGTGGTGTGGGCAAAGTCAATCATCCTCACGTCCACCGCCGGGCCAGGGCCCGTATCAGATCGGGCTGCCAGACGTCCACCATCagtgctaccactactactgctgccggGAAACCCAAACGCACTTGCCTCTTCATctttctccacttcctcctcttcttcctcctcagaCAGACCGCCCTCGGggcctctgcgtgtgtgtgtgcggggtggCTCACCATCGTAGATGATGAGCAGGGAGGAGGAATAGAAGCGGTAGGACTCGCAGCCCTCCAGAGCTGCCTGCATCTCCCTGAGCCTCCGCAGCACCGGGGAGAGCAGCTCGCGCCGCAGACGCCGCCCGTCACGGAAGAACTGGAACAGAGCCTCCTTGAAGCCCGACAGGGTCAGTTTACGCCCAATGTACTTATCCATGAACATGAGCTGACCCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU702683 True 1151 lncRNA 0.49 2 48959418 48960604

Neighbor

gene id symbol gene type direction distance location
LOC100136282 LOC106582915 coding downstream 156340 48787061 ~ 48803078 (-)
LOC110527928 LOC106582913 coding downstream 187698 48747496 ~ 48771720 (-)
LOC110527927 NA coding downstream 223084 48727369 ~ 48736334 (-)
LOC110527922 LOC106582908 coding downstream 715763 48214927 ~ 48243655 (-)
LOC110527920 LOC106582905 coding downstream 841333 48074448 ~ 48118085 (-)
LOC110527937 LOC106582921 coding upstream 37160 48997764 ~ 49004836 (-)
LOC110527944 NA coding upstream 123306 49083910 ~ 49088195 (-)
LOC110527945 LOC106565815 coding upstream 154440 49115044 ~ 49117838 (-)
LOC110527948 LOC106582926 coding upstream 176084 49136688 ~ 49144153 (-)
LOC110527952 LOC106582936 coding upstream 314577 49275181 ~ 49289804 (-)
G617513 NA non-coding downstream 81 48958549 ~ 48959337 (-)
G617512 NA non-coding downstream 1534 48957535 ~ 48957884 (-)
G617507 LOC106582920 non-coding downstream 7089 48951695 ~ 48952329 (-)
G617128 NA non-coding downstream 139672 48819541 ~ 48819746 (-)
G617125 NA non-coding downstream 142741 48816465 ~ 48816677 (-)
G617516 NA non-coding upstream 1303 48961907 ~ 48962397 (-)
G617540 NA non-coding upstream 47300 49007904 ~ 49040550 (-)
G617593 NA non-coding upstream 158410 49119014 ~ 49120233 (-)
G617594 NA non-coding upstream 161499 49122103 ~ 49122837 (-)
G616880 NA other downstream 430250 48487047 ~ 48529168 (-)
LOC110527888 LOC106582868 other downstream 1689347 47260325 ~ 47284791 (-)
G613411 LOC106582852 other downstream 3083718 45874965 ~ 45875700 (-)
G611674 NA other downstream 4473666 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 5379454 43579093 ~ 43579964 (-)
G617624 LOC106582928 other upstream 223820 49184424 ~ 49186096 (-)
G617632 NA other upstream 235000 49195604 ~ 49195970 (-)
mustn1b mstn1 other upstream 334651 49295040 ~ 49297305 (-)
LOC110527961 LOC106565835 other upstream 699431 49660022 ~ 49936575 (-)
LOC110527964 LOC106583033 other upstream 1343844 50300364 ~ 50306278 (-)

Expression


Co-expression Network