G617593


Basic Information

Item Value
gene id G617593
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49119014 ~ 49120233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU702768
tgagtttaataataataaacatgaCTAAAATACAAAACTGGAGCAGTGTACTGAACGTAACcaaaaccaatactgcctgaagactAAGTCTtactgagggctatatgaagggagagtaaccAGGGTGGTGATCAAGTCCAGGTGTGTGctatgatggttgccaggtgtgagcAATGTGGGTTGCCAGGATCGGTGGTTAGTAAACCGTCAACGTCGAGCAccggagagagggagcaggcgtgacagtagtcatgaaatgctttgtccatggctcacatcaacaccatcatcccagacacccatGGCCCACTCCAGTTCAAATACctccctaacagatccacagatgacactatctctattgcactccacactgccctttcccacctggacaaaaggatcaCCTACATgacaatgctattcattgactacagctcagcgttcaacactgttgtgccctccaagctca
>TU702767
TTTACATCAGTCATCAGCTAAATGAATAAGTACATCGACAGCATCCCCACAGTGACGGGGTcaatacatatcccaaccagaagccatgggttaCAGGCAACTTTCACACTGAGATAAAGACTAGAGCTGCAGCTTTctaggagcaggacactaatcgtGATGCTTACAGTAAATCCCACTACGACCTCCAATgagccatcaaacaggaaaaatttcaatacagggctaagatcgaatcctactacaccgactctgacactcatcggatgtggcagggcttacaaaATATCAGAGATTACAAAGGAGAACCCAGCCGTGAActtcccagtgacgcgagcctaccagatgagctaaataccttctatgctcgcttcaaagcaagcaacactgaaccatgcaagagagcaccagctgttatgGATGACTGTAGGAtctcgc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU702768 False 466 lncRNA 0.47 1 49119014 49119479
TU702767 True 438 lncRNA 0.46 1 49119796 49120233

Neighbor

gene id symbol gene type direction distance location
LOC110527945 LOC106565815 coding downstream 1176 49115044 ~ 49117838 (-)
LOC110527944 NA coding downstream 30819 49083910 ~ 49088195 (-)
LOC110527937 LOC106582921 coding downstream 114178 48997764 ~ 49004836 (-)
LOC100136282 LOC106582915 coding downstream 315936 48787061 ~ 48803078 (-)
LOC110527928 LOC106582913 coding downstream 347294 48747496 ~ 48771720 (-)
LOC110527948 LOC106582926 coding upstream 16455 49136688 ~ 49144153 (-)
LOC110527952 LOC106582936 coding upstream 154948 49275181 ~ 49289804 (-)
mustn1b mstn1 coding upstream 174807 49295040 ~ 49297305 (-)
LOC110527953 LOC106582935 coding upstream 182923 49303156 ~ 49317531 (-)
LOC110528962 LOC106582933 coding upstream 197351 49317584 ~ 49334930 (-)
G617540 NA non-coding downstream 78464 49007904 ~ 49040550 (-)
G617516 NA non-coding downstream 156617 48961907 ~ 48962397 (-)
G617517 LOC106582920 non-coding downstream 158410 48959418 ~ 48960604 (-)
G617513 NA non-coding downstream 159677 48958549 ~ 48959337 (-)
G617594 NA non-coding upstream 1870 49122103 ~ 49122837 (-)
G617603 NA non-coding upstream 26959 49147192 ~ 49147481 (-)
G617605 NA non-coding upstream 31848 49152081 ~ 49153562 (-)
G617606 NA non-coding upstream 33576 49153809 ~ 49154080 (-)
G617607 NA non-coding upstream 35467 49155700 ~ 49155930 (-)
G616880 NA other downstream 589846 48487047 ~ 48529168 (-)
LOC110527888 LOC106582868 other downstream 1848943 47260325 ~ 47284791 (-)
G613411 LOC106582852 other downstream 3243314 45874965 ~ 45875700 (-)
G611674 NA other downstream 4633262 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 5539050 43579093 ~ 43579964 (-)
G617624 LOC106582928 other upstream 64191 49184424 ~ 49186096 (-)
G617632 NA other upstream 75371 49195604 ~ 49195970 (-)
LOC110527961 LOC106565835 other upstream 539802 49660022 ~ 49936575 (-)
LOC110527964 LOC106583033 other upstream 1184215 50300364 ~ 50306278 (-)

Expression


Co-expression Network