G617618 (LOC106582928)


Basic Information

Item Value
gene id G617618
gene name LOC106582928
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49174363 ~ 49178097 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU702795
AGTCTGCGTTTGGGCTTGATGAGAGGTCTGTTCTGGCCGTTCATCTTGTGGTACAAGCCGCAGGCGTTGCACAGGTAGTGACCCGTCCCGTCCCGCCGCCACAGCGGGGTGGAGGTGGCACCGCAGTTGACACACTCGCGCCCCTCTGAGCAGAATTCTGAGCACGACCGGGCTTTGCTTTTACACTTCGGCGTAAAGCTGGATGAAGATCCACCCAGCAGGCTACCGGGGTGGAAGAGACTGCCGCCGTATTCGTGTGGTGTTGGGAGAGAGTATGGGTAGGTCGGGATGGGGTGGTGTGTTGCGGGAGTTTGGGCACTCATCGAAGCCAGGCTGTTGCGGAGAGGACTGCAACCCTCCATTTTCATTCCCTCTGCCAGTGACACTTGGTATTTGATGGACTCCTTTTCGTCCATTCTTGTCGAGGTGGAGGTTGGAGAAGTAGGGCCGAGGTCCGGAGACACGTCTTTGGGAGGCGTAGGAGGGAAACTGTAGAGATGGTGCGGGCTGCAGTGGGACGCAGGGGTGAGGGAAGACACCGGAGCAGTGCTGGAGCTGCTACTGCAAGGGTAGCCGGAGCTAGCAGGATGCATTCCTGGCTTGCTGAAGTGACTGACCGCCCATGCGTTATGGTGGTGGGCAGCAGAGAGGGCCGCCTTCCCGCTGTCAAGCCACGGAATGCCGGGGCTGTGGATGAGGTGTGGCCGGCAAACCGGACTCCCAAGGCGAG

Function

NR:

description
GATA-binding factor 2-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU702795 True 730 lncRNA 0.60 2 49174363 49178097

Neighbor

gene id symbol gene type direction distance location
LOC110527948 LOC106582926 coding downstream 30210 49136688 ~ 49144153 (-)
LOC110527945 LOC106565815 coding downstream 56525 49115044 ~ 49117838 (-)
LOC110527944 NA coding downstream 86168 49083910 ~ 49088195 (-)
LOC110527937 LOC106582921 coding downstream 169527 48997764 ~ 49004836 (-)
LOC100136282 LOC106582915 coding downstream 371285 48787061 ~ 48803078 (-)
LOC110527952 LOC106582936 coding upstream 97084 49275181 ~ 49289804 (-)
mustn1b mstn1 coding upstream 116943 49295040 ~ 49297305 (-)
LOC110527953 LOC106582935 coding upstream 125059 49303156 ~ 49317531 (-)
LOC110528962 LOC106582933 coding upstream 139487 49317584 ~ 49334930 (-)
LOC110527955 LOC100195900 coding upstream 164261 49342358 ~ 49380684 (-)
G617617 LOC106582928 non-coding downstream 906 49172440 ~ 49173457 (-)
G617607 NA non-coding downstream 18433 49155700 ~ 49155930 (-)
G617606 NA non-coding downstream 20283 49153809 ~ 49154080 (-)
G617605 NA non-coding downstream 20801 49152081 ~ 49153562 (-)
G617603 NA non-coding downstream 26882 49147192 ~ 49147481 (-)
G617621 NA non-coding upstream 2693 49180790 ~ 49181571 (-)
G617628 NA non-coding upstream 13259 49191356 ~ 49191558 (-)
G617637 NA non-coding upstream 27475 49205572 ~ 49268133 (-)
G617650 NA non-coding upstream 120548 49298645 ~ 49301227 (-)
G617730 NA non-coding upstream 236029 49414126 ~ 49414400 (-)
G616880 NA other downstream 645195 48487047 ~ 48529168 (-)
LOC110527888 LOC106582868 other downstream 1904292 47260325 ~ 47284791 (-)
G613411 LOC106582852 other downstream 3298663 45874965 ~ 45875700 (-)
G611674 NA other downstream 4688611 44484855 ~ 44485752 (-)
G610570 LOC106582807 other downstream 5594399 43579093 ~ 43579964 (-)
G617624 LOC106582928 other upstream 6327 49184424 ~ 49186096 (-)
G617632 NA other upstream 17507 49195604 ~ 49195970 (-)
LOC110527961 LOC106565835 other upstream 481938 49660022 ~ 49936575 (-)
LOC110527964 LOC106583033 other upstream 1126351 50300364 ~ 50306278 (-)

Expression

G617618(LOC106582928) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

G617618(LOC106582928) Expression in each Bioproject

Bar chart with 9 bars.
G617618(LOC106582928) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network