G617383


Basic Information

Item Value
gene id G617383
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49342377 ~ 49344723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU702519
gtttatttataaTCAGATGTAAAATATGAAGACAGTAAAAAAGTACATCCTTTATAAATATTGTGTCTGTTTAGGGCAATCAACATTTTCATTTCATATCCAGCATATTATTATTTTCTTGTTACAATACCAGGGGCCTCATGCACCCATTATTTTAGAGGGGTGATATAGTACATGAAGATGGATGGTGGGAATTCTGACCATTTCTGACAAGTTGGAGAgtagcatttttcaaacacctgaaacagctttttcctgcaatctagagccataattgTTATGCCTAATTCTatgtaaatatattatatttttttgcatAGGTTATTTAACCATACCCCTAACCGGTTTAATTGTAATTTTAATTAATGATGCACATTGATTCTTTAAGAACTTTTATATATCTTAAGAGTTTAGTACAAACTGCCACACTGGTATATAGTCTCATAACCCAAGAATTAAAgctatttttgtattttctaaagtctagcaaccttgccagcagacatgtcagctaagatagttagacaagctactctaacttgactgatagcctgaaatggctggGAATCTATTTATGAGGCTGGGAGATTAGGAAACTATTCATAATAAAACacgcttcactgtcccaataattacaaaGGGCactgtagctggctagctaaagtcaacttcataaaattgctaggtggctagtattacagagaaacaaccaaACATGTGTTTTATTTACTTATCAAGAATTAATCAATTGGCTACATAGCGTGATCAAAATTATTTTCATACATAGCTCCTGTGAGACCTGCCGATAAACCGGCAGTAAAAATCAACTGTGATTCACTCGAtactctcctcctccactgacaATACTCTCTGCACGCATATCTTTGGTCCGCAATGCACCTTGGAAGGAGCCACTTACTGGTCCAGACTCTGTGGCCCCTCCGCAACATACAGCTGACAGAtctttttttataaataatgatGAAAATATGTGGgctctttaggtttcttcctaggttcctgcctttctatggagtttttcctagccactgtgcttctacatctgcattgcttgctgtttggagttttaggctggggttctgtacagcacttcatgacatcggctgatgtaaaacagggctttataaatacatttgaacgaTTGGCTTAAAAATGATATTTAGTAAATAATGTTATTTAGTAAATAATGTAACGTGAGGAGGCACGTGTCCTTGTGCCCCCGATGGGCATGATGCCTCTGACAATACTTTCAAGTAACACAAGACCCAATTATCCATCCTTTTGCCAATGGAATACCCCCCAACACACCCATATCCTTCAAAACGACACACCGTGTAGTACCATTAAACTTACTCCCTTCAGAAAGATGTTCCACTCTGTTTCACACTTACTCAGGTCTTAATCAGAGTAGCTGCAGTTGGTTCAGGAAAGTGGGGAAGTTGCAGTACTGGTTGCAAACCCTTAGTTTTATACCGTGTGGATGGGCAGCTAGATCCACACGGTGAGAGGGGAATGAGACTATCCATGCCAGCATACATCTGTGCGTTCTCTACTGGTCCTGTTTCTTGGGTATTATACAACAAGATTTTGTATGCAGCACCCATTCATTTTGTACCTGAAAAAGTACAAACTTTTTTTTCATTATAGACAATTCATAACTGGCACCAACATGTGACTCCAAATCAGAGTAACTGCTACAGCTAGGGGGAAATACTAGACATTCATGCTGTCACTCACAAAGACACATTCATTTATGCATTTACGCACAGCGAGTGctgacacgcacagacacacaaaatATTATGTGAATGATCAGGACAGGAAAGAGTGACAGACAGTAGGTAGGGCACACAGGGGTGTGATAATAGAGCCACATTTGATCCCCGACTTCCCAGCATGCAAAATATTAAACAACAGTCTGAGTTATGGGGTGGTGCAAGTGTTGTTGGGGGATAAAGTACAGTATATGGACTGATTCATATTGATTCAATATTTGATCACAAGGAAAAGAATGACACCACTATTGATTGGACCCACCACAGTGATAAATGCtatactggtctctctctccttccttccttccttccttccttccttccttccttccgttTATATGTTTATaatggatagatggaggaatcATGTTGTGCCTTCAATTGACCATAATGCATTCCATCTTGGGGTTGATGAAAGAGAAGCCTGCAAAGGCCGCCTGGTCCATAGAGTCAATCAGGTTCTTGTCCGCGTGGGAGAGGCGGGGCTTCTCACGCAGGAACTCCCGGTCAAAGTTGCTGCAGTCATTGGGC

Function

NR:

description
protein kinase C delta type-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU702519 True 2327 lncRNA 0.40 2 49342377 49344723

Neighbor

gene id symbol gene type direction distance location
trnae-cuc-5 NA coding upstream 36803 49305503 ~ 49305574 (+)
trnae-cuc-4 NA coding upstream 43800 49297929 ~ 49301234 (+)
LOC110527950 LOC106582928 coding upstream 155408 49167003 ~ 49186969 (+)
LOC110527949 LOC106582927 coding upstream 188804 49148622 ~ 49153573 (+)
hmces hmces coding upstream 206625 49130079 ~ 49135752 (+)
LOC110527119 NA coding downstream 39579 49384302 ~ 49386132 (+)
LOC110527957 uba3 coding downstream 128803 49473526 ~ 49487883 (+)
nhe3 nhe3 coding downstream 170450 49515173 ~ 49534053 (+)
LOC110527958 tmf1 coding downstream 192466 49537189 ~ 49549801 (+)
LOC110527959 LOC106583042 coding downstream 205088 49549811 ~ 49565246 (+)
G617346 NA non-coding upstream 44759 49274883 ~ 49297618 (+)
G617347 NA non-coding upstream 52688 49287795 ~ 49289689 (+)
G617345 LOC106582936 non-coding upstream 57925 49275178 ~ 49284452 (+)
G617315 NA non-coding upstream 70739 49235981 ~ 49271638 (+)
G617447 NA non-coding downstream 94062 49438785 ~ 49438992 (+)
G617763 NA non-coding downstream 107169 49451892 ~ 49452287 (+)
G617769 NA non-coding downstream 112682 49457405 ~ 49476811 (+)
G617811 NA non-coding downstream 195213 49539936 ~ 49540434 (+)
G617133 NA other upstream 515150 48826827 ~ 48827227 (+)
G615624 NA other upstream 1502655 47839388 ~ 47839722 (+)
LOC110528958 NA other upstream 2704423 46629591 ~ 46638492 (+)
G613664 NA other upstream 3063044 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 5314149 44002556 ~ 44035143 (+)
tafa4b LOC106583040 other downstream 227597 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 958707 50303430 ~ 50304232 (+)
LOC110527970 LOC106583026 other downstream 1615771 50960494 ~ 51079129 (+)
G621650 NA other downstream 3046625 52391348 ~ 52391633 (+)
G621695 LOC106582949 other downstream 3146445 52491168 ~ 52493240 (+)

Expression


Co-expression Network