G619081


Basic Information

Item Value
gene id G619081
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 50437433 ~ 50441626 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU704332
agACACTTCAATGTTTAAGCTTTGACATTGGTACAATGGTTTCAGACAGTTTATTTCAATAAATTACTGCACATCACCCCTGCATCCATTCAGGCGTTGACATAATGGGCCGACACTCTACTGACAACTTATGACTGACCATCTAGAATTCCTGCTCTCTGAAGAATATTCTCATAAGTCAAACAATTTGACCCATTTTTGATAAAGTAAATAGCAAAACAAGTGCTTACAAACAATTAGCCTATAAAATGGCTAAACATATGCATACATTACAAAATGTAATTCTGTTTAAACTGACATTCACAGTATCTGGTTTTGTCAGCCCAGTTTACCCAGGCCTGTAGACAGGGGGCATTTCTCCTCAGGTTGGAAGGGGTACATTTCACAAGTTTACCAATAGTAAGCTGTTGATAGAATTTAGAGGTGTTCAGTTTGTACCAGTCAATAATAAAACAGGTTTTTGTACCATTATCataatgatgattattattatcaGTATTATTGTGTGTGGTGCTCTGACAAAGGCTAAATACTGGCCATCCcctgtgtgcacacacacacaacagtgagACATGATAGCAATCAAACAGTATGACAACAGTCTCAAAATGCCCTCCTGGTAAGAATTCCACATTCCCTTTTACAGCGTGGCAGGTTCATGGTATAGGATAACATACTGGGATGGAAGGGGGGATAACAAATGATTCTAGGAATTGGACCACATTCATAATAAATGTGTATTCAAAGGATCTGGACCTTTAGTTGAACAAATAAAGAATAATGAAAACAAATGGAGCTGAGGCACCGTGGAGGATCTATTCCCTAAACCAAAAGGCAACTGAAGTGTTGGTAGCAGGTGTTGGAACtagttcagggaacagaacacaacattttcaaggaacagTATCAGAACAAAAGTGATCTACACTGTTCCTGAACAGAACCGTTATTATAAAAGCATGGGTACCGGATAATAACATTCTTTTACGTTCTGGcaaaaaaaatgcaacaaagcAGCTATGCAAATCCCTCattctgtcactcagaaacttaTCCCAGTGTCTGCCTGTCAGCTGGAAATCTTTACCAGTGTGTGCGCGCgcgtaggctacctgcccctcccctccGAAGAATAGGCCGTAGCCTACAGAAATTACAAGCAagattcagaaattagggagagattTTTTAACTAGAGAAGAATGTATTAACTTTTTCAATGTTAGTTAAATATACTATAGTTATCatgtttcacattggatttattaacttcAAATAGGAaagacatgtttttattttcattctggtgccgctctgcacagcttgttagctagctagccctgGTCCAACGTTAAGACAACTctctgaagttcaaagacattcaaagttcctccatagaagaCACTCTTCTGTAGGTTGAATATTTGTGGGCCTAATTCATATAAATGCATGTAATAaacaagatgcccagcgcttcaagccaagcctcctctgctctctctcactacaCAAACAAATTTGCATCTCGCGCCTTACACGTCTGTCCaatgaatgtaaaaaaataaaaaataaaaactatagCTTACCCGCTCCATTGCAAGCTGCTCTATCCGCACtaattggtgaagtaatttaatgttgGCATAAATAAAAAAGAATAAATGACATGTTTAAAAGGGAACAGTAAGGAACGATataaatcagtatttttggaggTTCAAACAGCCTCAGAACTACATTTCCTGTTGTAAAAACAAAATAAGAAACAAaaggttctgttcagaacaaaacAAAAAGGAACAAAAATTTGGTTCTAAGCCCTGGTTGGTACAGTGCTTTCGGTAAGTATTCACAGCCttttacttttttcacatttggttgagttacagcctgaatttaaaatggattaaatgttgaTGTTTTGTCACTgatgcaataccccataatgtcaaagtggaaatatgtttttagacatttttacaaattcataaaaataaaaagttgaaatgtcttgagtcaataagtatacaACCCCTTTGTTttgtcaagcctaaataagttcaggagtaaaaatttttttaacaagtcacataagttacTCATATGTTTAACATGCTTTTTGAATGACATACCTCATCTCATCCACACATaaagataattgtaaggtccctcagtcaagcagtgaatttcaaacacagattgaaccacaaagaccagggaagttttccaatgcctcaaagAAGGGCACCCATTTGTAGATTGGTAAAAATATCCTACggttaagttattaattacatgtgggatggcgtatcaggcatcgttcctaactcagttgatggagaggaaggaaaccactctgGGATTTCACCAGGAGGCCAATGgcgactttaaaacagagtttaatggctgtgatgggagaagactgaggatggatcaacaacattgtacttactccacaatactaacctaactgacagagtgaaaaggaaccCTGTAAAGAATAtttaatattccaaaacatgcatcctgttttcagtAATACTGCAAGGAATGTGGCAAACCAATTAACTttttatcctgaatacaaagtgttatgtttggtatgttaaattcaatacaacacattactgagcaccactctccatattttcaagcatagtggtggctgcatcatgttatgggtatgcttttaattgttaaggactggggagtttttcagaataaaaaaagaaatggaatggagctaggCGCAGGCAAAATttgagaggaaaacctggttctgtctgatttccaccaaacactgggagattaatttaccaatcagcaggacaataacttaaaacaaaaGGCCAAATTTACAtgggagttgtttaccaagaagacagtgaatgttcctgagtggccgagttacagtttgaaAGTCATTTTCCATAaatctgcaaacatttctaaaaacatgttttcactttgtcatggggtaattgtgtgtagatgggtgaaaatccattttgaattcaggctgttatgaatactttctgaaggcactgtagttagtACCATGACAGGTGGAAGAGACTTGACATTCCATGGCTATGTCAGAAATGAGTCGCATTTCCTGACTAGGGTTTCTTACGTTCCTATTGGGTTACATGTACCGAGTCTGTTTCCAGAGGTCATTTATGATGAGTACAAAAGTGCTTAAACATCAAAAACCTAGATTAATATCCCAAACACTTCCTTGTCATAGGTGTTACCATATCACGtaccaaaataaatacaaattaaagcTTCCTTCATAAAATACCAGGAAATATGAGTTATGGTTTAAGGCcatgatggcagcatttgcgtttGTCAAACAACATTCAAGTGCAATAAAGTGTTCCATGGTATGACAAAGAGTGTACGATAGCTCTCACAAATCTCTGCTATACTACGAGTCCCGTTTGTGGTTTCTTTGATCATGCAATAAGGCACCGCAGTTGAAGCTGGTAAGTAGAGGCTTTTAAAAGAGAAAAAAATACCATCACTCCGTTCTTTGTCATGCACAGAATAAATTCAAATACTCTTTGTAAaagttatataatatatatgaaAACTCTTATGTACAGTTAATTGTCCAATggtatatatatatctctttcgctctctttcacACATTACTGTAAAACATTCCCTACATTTGCATGCTTCAAATGCAAGTCACATTTGGAGCTAGGATTGGTTGACACCTCCCAGGGGAAGGTTTTTAAGTATGTACAGCTGATACGCTCAAATGGGACGCCACCCACACAAGCTCTGCCTTCAAACCTCTGGATGCCACCCCCCTCCCAGCTCCCACCCTGTTAGTCCAAACAGGGGAGGGGATCAGATCTTGGCCTCTCTGTTTGAGGTAGCAGTTCCCAGTGCAAAGAACAAGTCCACTCAGGGCTAGTGAGTCTATTAGTGTCAGGGTGGGGAGGGCCTGCTAGTCGCTGGCGCTCCTGAGGGGGGTGCTGTCACTCTGGGAGGCTCTGGGAGTGTGTCCGTTGGACAGTAGAGTCTGTCTGAGCTCTGGCTCACGATCCGTGTCCAGTGTGTCTTGGCGTCTTACGGGGGCGAGTTTCACCGGCTTGTGGAAGGCCTCCTCCTGGGATGGGGAGCACACTAGAGTTGTGTGTCC

Function

NR:

description
leucine-rich repeats and immunoglobulin-like domains protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU704332 True 4162 lncRNA 0.39 2 50437433 50441626

Neighbor

gene id symbol gene type direction distance location
LOC110527964 LOC106583033 coding downstream 131155 50300364 ~ 50306278 (-)
LOC110527963 LOC106583034 coding downstream 137296 50279611 ~ 50300137 (-)
LOC110527961 LOC106565835 coding downstream 500858 49660022 ~ 49936575 (-)
LOC110527956 LOC106583046 coding downstream 1004051 49389037 ~ 49433382 (-)
LOC110527955 LOC100195900 coding downstream 1056749 49342358 ~ 49380684 (-)
LOC110528963 NA coding upstream 67847 50509424 ~ 50540585 (-)
LOC118965294 NA coding upstream 495583 50937209 ~ 50939964 (-)
LOC118965295 NA coding upstream 645663 51087289 ~ 51091164 (-)
LOC110527971 LOC106583024 coding upstream 655831 51097457 ~ 51152020 (-)
LOC110527973 synpr coding upstream 737577 51179203 ~ 51207209 (-)
G619037 NA non-coding downstream 70229 50366994 ~ 50367204 (-)
G618969 NA non-coding downstream 84089 50353127 ~ 50353344 (-)
G618963 NA non-coding downstream 86551 50350593 ~ 50350882 (-)
G618912 NA non-coding downstream 124367 50312837 ~ 50313066 (-)
G619084 NA non-coding upstream 230 50441856 ~ 50442075 (-)
G619090 NA non-coding upstream 7326 50448952 ~ 50449159 (-)
G619098 NA non-coding upstream 16255 50457881 ~ 50458162 (-)
G619126 NA non-coding upstream 47798 50489424 ~ 50489644 (-)
mustn1b mstn1 other downstream 1140185 49295040 ~ 49297305 (-)
G617632 NA other downstream 1241463 49195604 ~ 49195970 (-)
G617624 LOC106582928 other downstream 1251337 49184424 ~ 49186096 (-)
G619733 NA other upstream 514645 50956271 ~ 50958540 (-)
G622985 NA other upstream 2863910 53305536 ~ 53322831 (-)
G625426 NA other upstream 4630853 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 4722866 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 4991830 55420466 ~ 55566988 (-)

Expression


Co-expression Network