G619478 (LOC106583030)


Basic Information

Item Value
gene id G619478
gene name LOC106583030
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 50705082 ~ 50798597 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU704759
atcatcatcatcatagttcAACTTTATCCTCCCCTTCATTTGTTTAAAATGATCACCTCTGAATTTACACATACTGCACACTGTCCAAAAATATACAAACAAATGCAGGCTTGTGCTATAGTCTGGTCAAATGTCTAAAAACAGTGGCactgggggagagaaagaaaagagaagacATTGAAACCGTAAAGACATGCACAGCATCTGTGTCAGTGGCACCAGTCACTGGGGCTGTGTAATGCCTACCTCCTTGGGCTCAGTGGAAAAGTACATACCACTTTCGGCTGAGAAAACACTCATCTCATATCAAACAAAGACAAAAGAAAAATACACTCATTAAAATAACTGTTAGGCACATCATTGTTTTTTTTCGGTTTTACATTTTCTGCAAAATTCTGATAAATATACAATGCTTAACCAACTAAcgaccccccaaaaaatccaaCAAACAGAAAAAGTTGATAGGTTTTGGAATCACTGTCTAGTAGGAAAGCAGGAATGTCATATAATCAATACATTTGGTTCATCCAAGGTCCAGGTGTGTTCTGCTGTGTGAAGAGTAGAGCTGAGTGGTGAGGGGGAACTGTGTTGCTGTGGGGAGGTTGGAGGGAAGGCTGGTTGTGTTACAGCAGATGACCCATCAGATGCTCAGGTCTTTGGTGCCATCTTTATGGGCCTTCCGCTTGGGCTTCGGGAGAGCTTTGGAAGCACGGCTGGCATTAGACTTAAGTGTGCTGTAATACTCTTTCAGTCTGGGTgctgcctcttcctcctcctccggttCTCTGAAGCTTCTGACAGGTGAAATGTCTTGGCCCAGGCTACGGGCTCTATGGTGGGGGTCTGGGGAGCGcggctctctctccactctctcaggCGAGCGGCCCCTTAGCAGTGAGCTGTACCTCTTGTAGGCGCTGTCTGACTCAGGGGTGTGGACCCTGGGAAGGATCTCCCCTCTCTGGCCACGGGCAGCAGCAGATAACAGGCTGTCTCCTCTGTAGTCACGCTCCAGGTTGGAGGCCGTCAGCAGAAGGCTGTCCTCCCCAAACAGGTGCTCCTCTCTGGACTCCCTCAGTCGCGTGACCTCCCTGTTGAGCTGGTCCAGGGCTGGGGGCTCCTGTAGGAGGCTCTCATCCAGGAAGGGGCTGGGCACAGGGCCAGGAGGCTTCCTCAGCACTGGTGCCTTCTCCCCGTTGggcctctctggctctctgtgtcgctgtctgtctaGGGAGGGCTGCCGGTAGGGGTCTGAGGATTGGGTACGGCGtcggggggggggggggggggggggggggggggg

Function

NR:

description
membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU704759 True 1306 lncRNA 0.52 2 50705082 50798597

Neighbor

gene id symbol gene type direction distance location
LOC110528963 NA coding downstream 164497 50509424 ~ 50540585 (-)
LOC110527964 LOC106583033 coding downstream 398804 50300364 ~ 50306278 (-)
LOC110527963 LOC106583034 coding downstream 404945 50279611 ~ 50300137 (-)
LOC110527961 LOC106565835 coding downstream 768507 49660022 ~ 49936575 (-)
LOC110527956 LOC106583046 coding downstream 1271700 49389037 ~ 49433382 (-)
LOC118965294 NA coding upstream 138612 50937209 ~ 50939964 (-)
LOC118965295 NA coding upstream 288692 51087289 ~ 51091164 (-)
LOC110527971 LOC106583024 coding upstream 298860 51097457 ~ 51152020 (-)
LOC110527973 synpr coding upstream 380606 51179203 ~ 51207209 (-)
ptprga LOC106583020 coding upstream 650434 51449031 ~ 51726478 (-)
G619353 NA non-coding downstream 146109 50550860 ~ 50558973 (-)
G619126 NA non-coding downstream 215438 50489424 ~ 50489644 (-)
G619098 NA non-coding downstream 246920 50457881 ~ 50458162 (-)
G619090 NA non-coding downstream 255923 50448952 ~ 50449159 (-)
G619584 NA non-coding upstream 40695 50839292 ~ 50839529 (-)
G619602 NA non-coding upstream 53895 50852492 ~ 50852793 (-)
G619688 NA non-coding upstream 88426 50887023 ~ 50893816 (-)
G619732 NA non-coding upstream 156867 50955464 ~ 50956197 (-)
G619833 NA non-coding upstream 198976 50997573 ~ 51037061 (-)
mustn1b mstn1 other downstream 1407834 49295040 ~ 49297305 (-)
G617632 NA other downstream 1509112 49195604 ~ 49195970 (-)
G617624 LOC106582928 other downstream 1518986 49184424 ~ 49186096 (-)
G619733 NA other upstream 157674 50956271 ~ 50958540 (-)
G622985 NA other upstream 2506939 53305536 ~ 53322831 (-)
G625426 NA other upstream 4273882 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 4365895 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 4634859 55420466 ~ 55566988 (-)

Expression


Co-expression Network