G619688


Basic Information

Item Value
gene id G619688
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 50887023 ~ 50893816 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU704989
tgatggagacgtgactgaggatgtgttcccgaagcttctctattccggttgttttgttgctgttaaacgtgtgttttgtagcctgagagagtttacccaggatcggatccactctttgcgtccgtggactactCCTCTCTattcttcgtggcctttctccgctggagatctgttggcggattggattgtctgactgaccgactgactaccaccttttttgtatacggtatttcatttgttttgatatgatgtatacggtgatgatttatgtagttgaggaattagtAAGAGCAgatacgctttaaagttctgtggtaaaattgttatattgattgtatgatttaatactgggtttacgctacacggaatgaacggacaaacattgcgtgacaaaagtcacttgagttcactgaactcctttaccgggctggactctttttaggcccgaggtacaggacatttctggaggaaccagaactcattgtgttatattattatgtgtgtgtaatccattgatgttgctaatacaacccac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU704989 True 535 lncRNA 0.42 2 50887023 50893816

Neighbor

gene id symbol gene type direction distance location
LOC110528963 NA coding downstream 346438 50509424 ~ 50540585 (-)
LOC110527964 LOC106583033 coding downstream 580745 50300364 ~ 50306278 (-)
LOC110527963 LOC106583034 coding downstream 586886 50279611 ~ 50300137 (-)
LOC110527961 LOC106565835 coding downstream 950448 49660022 ~ 49936575 (-)
LOC110527956 LOC106583046 coding downstream 1453641 49389037 ~ 49433382 (-)
LOC118965294 NA coding upstream 43393 50937209 ~ 50939964 (-)
LOC118965295 NA coding upstream 193473 51087289 ~ 51091164 (-)
LOC110527971 LOC106583024 coding upstream 203641 51097457 ~ 51152020 (-)
LOC110527973 synpr coding upstream 285387 51179203 ~ 51207209 (-)
ptprga LOC106583020 coding upstream 555215 51449031 ~ 51726478 (-)
G619602 NA non-coding downstream 34230 50852492 ~ 50852793 (-)
G619584 NA non-coding downstream 47494 50839292 ~ 50839529 (-)
G619478 LOC106583030 non-coding downstream 88426 50705082 ~ 50798597 (-)
G619514 NA non-coding downstream 133428 50753092 ~ 50753595 (-)
G619509 NA non-coding downstream 142978 50743768 ~ 50744045 (-)
G619732 NA non-coding upstream 61648 50955464 ~ 50956197 (-)
G619833 NA non-coding upstream 103757 50997573 ~ 51037061 (-)
G619876 NA non-coding upstream 184070 51077886 ~ 51079089 (-)
G620130 NA non-coding upstream 356540 51250356 ~ 51250574 (-)
G620236 fezf2 non-coding upstream 537630 51431446 ~ 51432983 (-)
mustn1b mstn1 other downstream 1589775 49295040 ~ 49297305 (-)
G617632 NA other downstream 1691053 49195604 ~ 49195970 (-)
G617624 LOC106582928 other downstream 1700927 49184424 ~ 49186096 (-)
G619733 NA other upstream 62455 50956271 ~ 50958540 (-)
G622985 NA other upstream 2411720 53305536 ~ 53322831 (-)
G625426 NA other upstream 4178663 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 4270676 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 4539640 55420466 ~ 55566988 (-)

Expression


Co-expression Network