G619833


Basic Information

Item Value
gene id G619833
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 50997573 ~ 51037061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU705145
attatttactaccattttatattattatttgctatcatttataattttgttacaatgtatattgtatacattgttgctttggcaatattgacacaatgtttttcatgccaataaagcagcttgaatttgaatttgaatttgagagacacacagagagagagagagacacagagagagagagcgacacagagagagagagagagagagagacagagagagagacacagagagagagagagacacagagagagagagagacacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagagagagagaga
>TU705147
attatttactaccattttatattattatttgctatcatttataattttgttacaatgtatattgtatacattgttgctttggcaatattgacacaatgtttttcatgccaataaagcagcttgaatttgaatttgaatttgagagacacacagagagagagagagacacagagagagagagcgacacagagagagagagagagagagagacagagagagagacacagagagagagagagacacagagagagagagagacacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagagagagagaga
>TU705144
attatttactaccattttatattattatttgctatcatttataattttgttacaatgtatattgtatacattgttgctttggcaatattgacacaatgtttttcatgccaataaagcagcttgaatttgaatttgaatttgagagacacacagagagagagagagacacagagagagagagcgacacagagagagagagagagagagagacagagagagagacacagagagagagagacacacagagagagagaga
>TU705143
attatttactaccattttatattattatttgctatcatttataattttgttacaatgtatattgtatacattgttgctttggcaatattgacacaatgtttttcatgccaataaagcagcttgaatttgaatttgaatttgagagacacacagagagagagagagacacagagagagagagcgacacagagagagagagagagagagagagagagagagacacagagagagagagagacacagagagagagagagacacagagagagacacagagagagagagacacagagaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU705145 False 334 lncRNA 0.39 3 50997573 51037061
TU705147 False 338 lncRNA 0.39 3 50997573 51037061
TU705144 False 256 lncRNA 0.36 2 51033788 51037061
TU705143 True 294 lncRNA 0.37 2 51036130 51037061

Neighbor

gene id symbol gene type direction distance location
LOC118965294 NA coding downstream 57609 50937209 ~ 50939964 (-)
LOC110528963 NA coding downstream 456988 50509424 ~ 50540585 (-)
LOC110527964 LOC106583033 coding downstream 691295 50300364 ~ 50306278 (-)
LOC110527963 LOC106583034 coding downstream 697436 50279611 ~ 50300137 (-)
LOC110527961 LOC106565835 coding downstream 1060998 49660022 ~ 49936575 (-)
LOC118965295 NA coding upstream 50228 51087289 ~ 51091164 (-)
LOC110527971 LOC106583024 coding upstream 60396 51097457 ~ 51152020 (-)
LOC110527973 synpr coding upstream 142142 51179203 ~ 51207209 (-)
ptprga LOC106583020 coding upstream 411970 51449031 ~ 51726478 (-)
LOC118965403 NA coding upstream 1416778 52453839 ~ 52453893 (-)
G619732 NA non-coding downstream 41376 50955464 ~ 50956197 (-)
G619688 NA non-coding downstream 103757 50887023 ~ 50893816 (-)
G619602 NA non-coding downstream 144780 50852492 ~ 50852793 (-)
G619584 NA non-coding downstream 158044 50839292 ~ 50839529 (-)
G619514 NA non-coding downstream 243978 50753092 ~ 50753595 (-)
G619876 NA non-coding upstream 40825 51077886 ~ 51079089 (-)
G620130 NA non-coding upstream 213295 51250356 ~ 51250574 (-)
G620236 fezf2 non-coding upstream 394385 51431446 ~ 51432983 (-)
G620237 NA non-coding upstream 396281 51433342 ~ 51433733 (-)
G620500 NA non-coding upstream 475149 51512210 ~ 51512411 (-)
G619733 NA other downstream 39033 50956271 ~ 50958540 (-)
mustn1b mstn1 other downstream 1700325 49295040 ~ 49297305 (-)
G617632 NA other downstream 1801603 49195604 ~ 49195970 (-)
G622985 NA other upstream 2268475 53305536 ~ 53322831 (-)
G625426 NA other upstream 4035418 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 4127431 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 4396395 55420466 ~ 55566988 (-)
G627254 NA other upstream 5654262 56691323 ~ 56696091 (-)

Expression


Co-expression Network