XLOC_025425 (ifi35)


Basic Information

Item Value
gene id XLOC_025425
gene name ifi35
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29941777 ~ 29948955 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050154
AGACCTACCTGAAACGAAAGCGAAACCGCATTGACTCTTCGGTTTGCTTCAGCACGGACGGTGTTTACATCAATAGAAATGTCTACTGAGGATTTCTGTGAGCTGGACTGTGAGTCTTTGGGACCCCTGGACAATGTACAGATGGAGTTGAACAAATGCAAGAAAACGTATAAAGCATTACTGAATGAGCAAAAAATACTGAGAGACGGCATTGACAACAACAAAGAATTTGCTAAGAAATTTAGAGAGCGAGCTGAGGAGCAGAAAGAGTCAAATGAGAATGAAAACAAGAAGCGAAGTAAAAAAATTCAGTCTGAGAAGGAGAAATGCAGGGCTATAGAAAGTCATAATACTAAGCAACGGATGGAGATCCTGAAAATCAAAGAGGAGTTGCAAAGCCTGGACAATAAAAACAGCAGCCTGAAAAAGCAAActgagATCTCCACAGCAGTGCCCGAGAGGAAGGTTGTATTTGAGGGAAAGACAAAAAATGGTGCACATGCTACGAGTTTTGATGTGAAATCCCAAATAGTTTATCCGATGGAAGGTGGAACGGCCCTGATCACCTTTGAGGAGGAGGATGTGGCCCAGAACATCTTGAGCCAGCAGAAGCATTTGGTGGCACTCGGGGAATGTGGCATCACTGTACAGGCTAAACCCATTCAGTTCCTGGTACCCGGCTATGTTGAGATGGAAACTCAGGTTTGCTCACACAGAATCTTAGTCTCCAACTTACCAATAGAAGAACCAGAAGAGCGAATACTAGACAAACTGGACATCCACTTCTCTAGGAAGAGGAACGGAGGCGGTGAGGTGGAGGAAACAGACATGCTGCACGACTCCAAGACTGTGGTCATCACATTCGTGGAGGATAACGTTGCCAAACCTCTCACAGACAAACAGGAGCATGAGGTAGACTTTGGTAAAAGGAAGTACAAGGTGAAGGTCACTCCATTCCTCAATGGCAAGATTTCAGAGATGAAGATCAGCAATTCAGTGTGTATGCGCACAGTTCTGCTTACGGGCATCCCTGACATCATGGACAAAGACAACCTGCAGGACAACCTGGAGATCCACTTCCAGAAGACGTCTAACGGTGGTGGAGAGGTGGAGGCTATCATCTACAACCCTCTGGGCCAAACCAGCACTGCCGTGTTTGATGAAGACTCTCCTAAAGACAGCCAGACTGAATGAGAATGCTAATGCTGCCTGCACACAACATAATAAGAGAATGAAGCAGACTCCTTCAACTCCTGATTCCGTCTGTATACAGAATGACTATGCAATTTCTATTCACTGCGATCTTTACCTCATGAGTCTTTAAAGAATGTAGACTATATAACAATCAGTCTCTCCAGGAGGTTTTTGTGAGTTTAATGGatcttgaattaaaaaaaaaaaaaaaagtctaacaagatttttctgtattttcacagcaaaacaaaagatTTTATTCCTATAATGCCATAGGTTTGGAGAAAAGCTGGTCTTTTGGGCAACaaattgcataaaataaatatccTAGAAAAATCTTGGAGGGACTGAGCAATGTACTACATTAATGGATACTTTTTTCTCTCGTTTAAAGTTCTTAGTTTTATTTCTTGTTATCTGATAAATATATGTTGGCAGATTGAGGTATGGTGATGGGTTAAtcttaaaacatttctttaaatgattgcTATCTGTACATATAAACAACAAAACCTTGAACATGGCcctaaataaatatgcaaaaacttTCA
>TCONS_00050155
AAACAATGCTTTCTGTTTCCTCACAGGTGTTTACATCAATAGAAATGTCTACTGAGGATTTCTGTGAGCTGGACTGTGAGTCTTTGGGACCCCTGGACAATGTACAGATGGAGTTGAACAAATGCAAGAAAACGTATAAAGCATTACTGAATGAGCAAAAAATACTGAGAGACGGCATTGACAACAACAAAGAATTTGCTAAGAAATTTAGAGAGCGAGCTGAGGAGCAGAAAGAGTCAAATGAGAATGAAAACAAGAAGCGAAGTAAAAAAATTCAGTCTGAGAAGgtctgttttattaaatatagaCTATTTtgatactatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctaaatgggATCTTCTGTGTGCAGGAGAAATGCAGGGCTATAGAAAGTCATAATACTAAGCAACGGATGGAGATCCTGAAAATCAAAGAGGAGTTGCAAAGCCTGGACAATAAAAACAGCAGCCTGAAAAAGCAAActgaggtttcaaaatattctcACATTTCATAGTTGCTGAACTAAATGGACTGTGTGACTTTAGATTATACTATCAGTACAATACATGCTGATAGAGAATGTATGCCGCAATAACCTTAATGG
>TCONS_00052702
AAACAATGCTTTCTGTTTCCTCACAGGTGTTTACATCAATAGAAATGTCTACTGAGGATTTCTGTGAGCTGGACTGTGAGTCTTTGGGACCCCTGGACAATGTACAGATGGAGTTGAACAAATGCAAGAAAACGTATAAAGCATTACTGAATGAGCAAAAAATACTGAGAGACGGCATTGACAACAACAAAGAATTTGCTAAGAAATTTAGAGAGCGAGCTGAGGAGCAGAAAGAGTCAAATGAGAATGAAAACAAGAAGCGAAGTAAAAAAATTCAGTCTGAGAAGGAGAAATGCAGGGCTATAGAAAGTCATAATACTAAGCAACGGATGGAGATCCTGAAAATCAAAGAGGAGTTGCAAAGCCTGGACAATAAAAACAGCAGCCTGAAAAAGCAAActgagATCTCCACAGCAGTGCCCGAGAGGAAGGTTGTATTTGAGGGAAAGACAAAAAATGGTGCACATGCTACGAGTTTTGATGTGAAATCCCAAATAGTTTATCCGATGGAAGGTGGAACGGCCCTGATCACCTTTGAGGAGGAGGATGTGGCCCAGAACATCTTGAGCCAGCAGAAGCATTTGGTGGCACTCGGGGAATGTGGCATCACTGTACAGGCTAAACCCATTCAGTTCCTGGTACCCGGCTATGTTGAGATGGAAACTCAGGTTTGCTCACACAGAATCTTAGTCTCCAACTTACCAATAGAAGAACCAGAAGAGCGAATACTAGACAAACTGGACATCCACTTCTCTAGG
>TCONS_00050156
ATGCTTTCTGTTTCCTCACAGGTGTTTACATCAATAGAAATGTCTACTGAGGATTTCTGTGAGCTGGACTGTGAGTCTTTGGGACCCCTGGACAATGTACAGATGGAGTTGAACAAATGCAAGAAAACGTATAAAGCATTACTGAATGAGCAAAAAATACTGAGAGACGGCATTGACAACAACAAAGAATTTGCTAAGAAATTTAGAGAGCGAGCTGAGGAGCAGAAAGAGTCAAATGAGAATGAAAACAAGAAGCGAAGTAAAAAAATTCAGTCTGAGAAGGAGAAATGCAGGGCTATAGAAAGTCATAATACTAAGCAACGGATGGAGATCCTGAAAATCAAAGAGGAGTTGCAAAGCCTGGACAATAAAAACAGCAGCCTGAAAAAGCAAActgagATCTCCACAGCAGTGCCCGAGAGGAAGGTTGTATTTGAGGGAAAGACAAAAAATGGTGCACATGCTACGAGTTTTGATGTGAAATCCCAAATAGTTTATCCGATGGAAGGTGGAACGGCCCTGATCACCTTTGAGGAGGAGGATGTGGCCCAGAACATCTTGAGCCAGCAGAAGCATTTGGTGGCACTCGGGGAATGTGGCATCACTGTACAGGCTAAACCCATTCAGTTCCTGGTACCCGGCTATGTTGAGATGGAAACTCAGGTTTGCTCACACAGAATCTTAGTCTCCAACTTACCAATAGAAGAACCAGAAGAGCGAATACTAGACAAACTGGACATCCACTTCTCTAGGAAGAGGAACGGAGGCGGTGAGGTGGAGGAAACAGACATGCTGCACGACTCCAAGACTGTGGTCATCACATTCGTGGAGGATAACGTTGCCAAACCTCTCACAGACAAACAGGAGCATGAGGTAGACTTTGGTAAAAGGAAGTACAAGGTGAAGGTCACTCCATTCCTCAATGGCAAGATTTCAGAGATGAAGATCAGCAATTCAGTGTGTATGCGCACAGTTCTGCTTACGGGCATCCCTGACATCATGGACAAAGACAACCTGCAGGACAACCTGGAGATCCACTTCCAGAAGACGTCTAACGGTGGTGGAGAGGTGGAGGCTATCATCTACAACCCTCTGGGCCAAACCAGCACTGCCGTGTTTGATGAAGACTCTCCTAAAGACAGCCAGACTGAATGA
>TCONS_00050157
ATGTCAACTCAGGATTTCTGTGAGCTGGACTGTGAGTCTTTGGGACCCCTGGACAATGTACAGATGGAGTTGAACAAATGCAAGAAAACGTATAAAGCATTACTGAATGAGCAAAAAATACTGAGAGACGGCATTGACAACAACAAAGAATTTGCTAAGAAATTTAGAGAGCGAGCTGAGGAGCAGAAAGAGTCAAATGAGAATGAAAACAAGAAGCGAAGTAAAAAAATTCAGTCTGAGAAGGAGAAATGCAGGGCTATAGAAAGTCATAATACTAAGCAACGGATGGAGATCCTGAAAATCAAAGAGGAGTTGCAAAGCCTGGACAATAAAAACAGCAGCCTGAAAAAGCAAActgagATCTCCACAGCAGTGCCCGAGAGGAAGGTTGTATTTGAGGGAAAGACAAAAAATGGTGCACATGCTACGAGTTTTGATGTGAAATCCCAAATAGTTTATCCGATGGAAGGTGGAACGGCCCTGATCACCTTTGAGGAGGAGGATGTGGCCCAGAACATCTTGAGCCAGCAGAAGCATTTGGTGGCACTCGGGGAATGTGGCATCACTGTACAGGCTAAACCCATTCAGTTCCTGGTACCCGGCTATGTTGAGATGGAAACTCAGGTTTGCTCACACAGAATCTTAGTCTCCAACTTACCAATAGAAGAACCAGAAGAGCGAATACTAGACAAACTGGACATCCACTTCTCTAGG

Function

symbol description
ifi35 Predicted to be active in nucleus. Orthologous to human IFI35 (interferon induced protein 35).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100311-2 Predicted to be active in nucleus. Orthologous to human IFI35 (interferon induced protein 35).

Ensembl:

ensembl_id ENSDARG00000075643

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050154 False 1745 mRNA 0.41 10 29941777 29948955
TCONS_00050155 False 665 lncRNA 0.35 3 29942333 29943166
TCONS_00052702 False 758 lncRNA 0.43 7 29942333 29945639
TCONS_00050156 False 1155 mRNA 0.45 9 29942338 29948404
TCONS_00050157 True 714 lncRNA 0.44 6 29942464 29945639

Neighbor

gene id symbol gene type direction distance location
XLOC_025424 BX901883.3 coding upstream 11890 29929582 ~ 29929887 (+)
XLOC_025423 NA coding upstream 26420 29914444 ~ 29915357 (+)
XLOC_025422 BX901883.7 coding upstream 45803 29881035 ~ 29895974 (+)
XLOC_025421 cacng2a coding upstream 96602 29714775 ~ 29845175 (+)
XLOC_025420 NA coding upstream 231555 29687549 ~ 29710222 (+)
XLOC_025426 NA coding downstream 17828 29966783 ~ 29967070 (+)
XLOC_025427 kcna7 coding downstream 31648 29980603 ~ 29983868 (+)
XLOC_025428 akt1s1 coding downstream 241464 30190419 ~ 30200557 (+)
XLOC_025430 mybpc2a coding downstream 308627 30257582 ~ 30353255 (+)
XLOC_025431 CR936968.2 coding downstream 405813 30354768 ~ 30355587 (+)
XLOC_025429 BX649540.1 misc downstream 299784 30248739 ~ 30249036 (+)
XLOC_025419 CT573429.1 non-coding upstream 270124 29664357 ~ 29671653 (+)
XLOC_025417 NA non-coding upstream 301483 29639984 ~ 29640294 (+)
XLOC_025432 NA non-coding downstream 548766 30497721 ~ 30506149 (+)
XLOC_025434 NA non-coding downstream 694207 30643162 ~ 30655558 (+)
XLOC_025435 NA non-coding downstream 745219 30694174 ~ 30695807 (+)

Expression


Co-expression Network