G619981


Basic Information

Item Value
gene id G619981
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 51250187 ~ 51251536 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU705315
CGGCTGGCTAATAAAGGCCAATTAATCACcaaataaacaacaggtgtaaccaataaacagacaaggagggggaggaaagaatcagtggcagctagtaggccggtgacgacgaccgccgagcgccacccgaacgggaaggggagccaccttcggtaggagtcgtgacactcATGAGGATCGCCATAGAGGATATGTtcataacatgctgaccagaccagagggttgcaaaataaatttagaaatccatgttattcaattattgcacccacactgctcgcgtgcgccaacgagcgtctgcgttgccaagggctaaaatagaagtcattcctatttctgactcagatcgtgctgcaagtcctgcctctcccatctcctcattgatttatagaagcaggtacccacgtgccatctcctcattggttatacccacgtgggtgattgaaagtcTAACTGTTTTGACggtcgtcgtggtaatactatgaaagtttagatgccaatcactatataagttcaaagatgaaaaaatcgggaaggaggagagatgactaaaaacgattcggttgaccgttttatgtgtggattaattatcggagtagaggaccttgtgcatttcaagtaaaataacaactcaatgtttatatcccaggacaaattagctagcatgtgcaagctagctaaataggacaaattagctagcatgtgcaagccagctagctaaattgccatacatgtttaatgcttttcgacctgtccccaaattaatgtaattggttcagagtttgttttgatattttaacctgcgtgtcgtgatcacgtttggtgtggggggacaaaataaatgtatgcacgatggcgcacgcgcacagacgttttgggttccgtgttagagttaccagcctcagaaattgcagcccaaataaatgcttcacagagttcaagtaccagacacatctcaacatcaactgttcagaggagactacgtgaatcaggccttcatggtcgaattgctgcaaagaaaccattactaaaggacaccaatgagaagaagagacttgcttgggccaaagaaacacaagcaatggacattagacctgtggaaatctgtcctttggtctgatgagtccaaatttgagatttttggttccaaacactgtgtctttgtgagatacagagtaggtgaacggatgatctcagcatgtgtggttcccactgtgaagcatagaggaggaggtgtgatggtgtgggggtgcgttgctggtgacactgtctgtgatttatggtAAAAAGCCACAGAAGCCTTGGCCATAAGGGTAAATTGTTGGCACTGTCTTTGGAGGGATGGGACGCGGC

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU705315 True 1350 lncRNA 0.45 1 51250187 51251536

Neighbor

gene id symbol gene type direction distance location
thoc7 thoc7 coding upstream 92124 51152050 ~ 51158063 (+)
psd6 psd6 coding upstream 152739 51093272 ~ 51097448 (+)
LOC110527970 LOC106583026 coding upstream 171058 50960494 ~ 51079129 (+)
LOC110527969 LOC106583028 coding upstream 292511 50880298 ~ 50957676 (+)
LOC110527968 LOC106612786 coding upstream 628793 50617230 ~ 50621394 (+)
LOC110528964 LOC106565849 coding downstream 587 51252123 ~ 51418349 (+)
LOC110527974 LOC106583021 coding downstream 178094 51429630 ~ 51433065 (+)
si:ch211-236d3.4 LOC106583019 coding downstream 1193583 52445119 ~ 52489548 (+)
LOC110527978 LOC106565857 coding downstream 1259734 52511270 ~ 52548815 (+)
LOC110527979 LOC106583014 coding downstream 1408098 52659634 ~ 52669736 (+)
G619953 NA non-coding upstream 58204 51189822 ~ 51191983 (+)
G619890 NA non-coding upstream 161756 51088019 ~ 51088431 (+)
G619769 NA non-coding upstream 213139 50997581 ~ 51037048 (+)
G619775 NA non-coding upstream 241465 51008255 ~ 51008722 (+)
G620230 NA non-coding downstream 182745 51434281 ~ 51435206 (+)
G620252 NA non-coding downstream 194805 51446341 ~ 51446574 (+)
G620282 NA non-coding downstream 234380 51485916 ~ 51487101 (+)
G620298 NA non-coding downstream 256709 51508245 ~ 51508461 (+)
G620308 NA non-coding downstream 280890 51532426 ~ 51532700 (+)
G618712 LOC106583033 other upstream 945955 50303430 ~ 50304232 (+)
tafa4b LOC106583040 other upstream 1630019 49571790 ~ 49620194 (+)
G617133 NA other upstream 2422960 48826827 ~ 48827227 (+)
G615624 NA other upstream 3410465 47839388 ~ 47839722 (+)
G621650 NA other downstream 1139812 52391348 ~ 52391633 (+)
G621695 LOC106582949 other downstream 1239632 52491168 ~ 52493240 (+)
G623180 NA other downstream 2502370 53753906 ~ 53754119 (+)
G624628 NA other downstream 3572101 54823637 ~ 54824199 (+)
G624962 LOC106582975 other downstream 3795760 55047296 ~ 55052688 (+)

Expression


Co-expression Network