G620236 (fezf2)


Basic Information

Item Value
gene id G620236
gene name fezf2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 51431446 ~ 51432983 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU705601
CTGGGTTGAGCAAAGAGTCCTGATTTCAATCATAAATGTTTAGAACATTAATCCAATCAGGGTCAGATTTACTGCAGTGCAACAGTACAAAATTCACATCCTtattattatactttttaaatCGAATAATAAAAAACCTCAAACACAAAATGGTCTTTAATCAGTCTAGTGTCTCAATGTTTTTTATGCTTTATAGTTTTCCGCCTTTTAACAATTTTTGATAAATGAAAACtgtagagagaaaaaataatagAAATGTGTACTGGTGTAGTCATAATAAACTGTCAATTGAAGTGTTGAAGGAGACTTTCCAAATCCAATGAAAAACTCAGCTTTCGGGTCCCCTGGAAGAATCGGTCGCTGCAGATATAGGCCTACATGAATTATTGTCATGTAACTTCCGTATGTGTTTTTTTAGGTCAAAGTTTCTGCAGAAGCCTTTCCCGCAGGTCCCGCACGTGAAGGGCTTTTTGTCgttgtgcgtgtgcatgtggaAGGTTAGGTTGTAGACCTGATGGAAGGCCTTGTTACAGATGGAACACTTGTACTGTTTCTCTCCGCTGTGCGTCAGCTTGTGGTTCTTGTAATTTCCTTTCTGGTGAAATCCTTTCCCACAGAATTCGCAGACGAATGGTTTGTACCCGGCATGGATTCGTATGTGAGTGTTCAGCGTCGAACTCCTGTTGAACGCCTTCCCACACTGGTTGCATTTATGAGGCTTTTCCTGTGTGTGG

Function

symbol description
fezf2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and zinc ion binding activity. Acts upstream of or within several processes, including nervous system development; neuronal stem cell population maintenance; and regulation of Notch signaling pathway. Predicted to be active in nucleus. Is expressed in several structures, including forebrain; neural keel; optic vesicle; retina; and ventricular zone. Orthologous to human FEZF2 (FEZ family zinc finger 2).

NR:

description
fez family zinc finger protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU705601 True 734 lncRNA 0.40 3 51431446 51432983

Neighbor

gene id symbol gene type direction distance location
LOC110527973 synpr coding downstream 224237 51179203 ~ 51207209 (-)
LOC110527971 LOC106583024 coding downstream 279426 51097457 ~ 51152020 (-)
LOC118965295 NA coding downstream 340282 51087289 ~ 51091164 (-)
LOC118965294 NA coding downstream 491482 50937209 ~ 50939964 (-)
LOC110528963 NA coding downstream 890861 50509424 ~ 50540585 (-)
ptprga LOC106583020 coding upstream 16048 51449031 ~ 51726478 (-)
LOC118965403 NA coding upstream 1020856 52453839 ~ 52453893 (-)
camk1b LOC106583015 coding upstream 1150806 52583789 ~ 52658755 (-)
spcs1 spcs1 coding upstream 1236469 52669452 ~ 52672489 (-)
gnl3 LOC106583012 coding upstream 1258358 52691341 ~ 52696843 (-)
G620130 NA non-coding downstream 180872 51250356 ~ 51250574 (-)
G619876 NA non-coding downstream 352357 51077886 ~ 51079089 (-)
G619833 NA non-coding downstream 394385 50997573 ~ 51037061 (-)
G619732 NA non-coding downstream 475249 50955464 ~ 50956197 (-)
G619688 NA non-coding downstream 537630 50887023 ~ 50893816 (-)
G620237 NA non-coding upstream 359 51433342 ~ 51433733 (-)
G620500 NA non-coding upstream 79227 51512210 ~ 51512411 (-)
G620503 NA non-coding upstream 81138 51514121 ~ 51515552 (-)
G620509 NA non-coding upstream 91089 51524072 ~ 51524294 (-)
G620510 NA non-coding upstream 91365 51524348 ~ 51525019 (-)
G619733 NA other downstream 472906 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 1125290 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 1495165 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 2134198 49295040 ~ 49297305 (-)
G617632 NA other downstream 2235476 49195604 ~ 49195970 (-)
G622985 NA other upstream 1872553 53305536 ~ 53322831 (-)
G625426 NA other upstream 3639496 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 3731509 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 4000473 55420466 ~ 55566988 (-)
G627254 NA other upstream 5258340 56691323 ~ 56696091 (-)

Expression


Co-expression Network