G621347


Basic Information

Item Value
gene id G621347
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 52123470 ~ 52255928 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU706750
gagaacgttctgctgcctgcaacatcctccagcatgaccggttttttatttttattttacctttatttaaccaggcaagtcagttaagaacaaattcttattttcaatgacggcctgggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcgggggtttgaactcacaaccttccggttactagtccaacgctctaaccactaggctaccctgccgccccgttatgtcgatgtaggactcgttttactatggatatagatactttggtacctgtttcctccagcatcttcacaaggtcctttgctgttgttctgggattgatttgcacttcttgcaccaaagtacattcatctctattagacagaacgcgtctccttcctgaacggtatgacatgtgcgtggtcccatggtgtttatacttgagtactattgtttgtacagatgaatgtggtatctttaggcatttggaaattgctcctaaggatgaaccagacttgtggaggtctacattttttttcttaggtcttgaggatttaaaaaatgctttacggcgaaagcataccttatgattatttgagaacatagcccagttgacaaattattac
>TU706749
gagaacgttctgctgcctgcaacatcctccagcatgaccggttttttatttttattttacctttatttaaccaggcaagtcagttaagaacaaattcttattttcaatgacggcctgggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcgggggtttgaactcacaaccttccggttactagtccaacgctctaaccactaggctaccctgccgccccgttt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU706750 False 631 lncRNA 0.42 3 52123470 52255928
TU706749 True 250 lncRNA 0.47 2 52161609 52255928

Neighbor

gene id symbol gene type direction distance location
ptprga LOC106583020 coding downstream 396992 51449031 ~ 51726478 (-)
LOC110527973 synpr coding downstream 916261 51179203 ~ 51207209 (-)
LOC110527971 LOC106583024 coding downstream 971450 51097457 ~ 51152020 (-)
LOC118965295 NA coding downstream 1032306 51087289 ~ 51091164 (-)
LOC118965294 NA coding downstream 1183506 50937209 ~ 50939964 (-)
LOC118965403 NA coding upstream 197911 52453839 ~ 52453893 (-)
camk1b LOC106583015 coding upstream 327861 52583789 ~ 52658755 (-)
spcs1 spcs1 coding upstream 413524 52669452 ~ 52672489 (-)
gnl3 LOC106583012 coding upstream 435413 52691341 ~ 52696843 (-)
LOC118965419 NA coding upstream 436184 52692112 ~ 52692187 (-)
G621165 NA non-coding downstream 45743 52077526 ~ 52077727 (-)
G621154 NA non-coding downstream 54535 52068722 ~ 52068935 (-)
G621102 NA non-coding downstream 88766 52034412 ~ 52034704 (-)
G621079 NA non-coding downstream 102133 52020886 ~ 52021337 (-)
G621076 NA non-coding downstream 103544 52019654 ~ 52019926 (-)
G621455 NA non-coding upstream 6142 52262070 ~ 52262285 (-)
G621463 NA non-coding upstream 9724 52265652 ~ 52265855 (-)
G621494 NA non-coding upstream 31164 52287092 ~ 52287307 (-)
G621532 NA non-coding upstream 52594 52308522 ~ 52308816 (-)
G621537 NA non-coding upstream 55358 52311286 ~ 52311559 (-)
G619733 NA other downstream 1164930 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 1817314 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 2187189 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 2826222 49295040 ~ 49297305 (-)
G617632 NA other downstream 2927500 49195604 ~ 49195970 (-)
G622985 NA other upstream 1049608 53305536 ~ 53322831 (-)
G625426 NA other upstream 2816551 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 2908564 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 3177528 55420466 ~ 55566988 (-)
G627254 NA other upstream 4435395 56691323 ~ 56696091 (-)

Expression


Co-expression Network