G621918 (LOC106583019)


Basic Information

Item Value
gene id G621918
gene name LOC106583019
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 52481627 ~ 52489499 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU707362
TTAAGCCCTTTGTACCTCCCTTCTCAGATATGTGGTAATTTGATCTTTTATTGTTATTTATAACAATCATATTGCTGTTATTAAAGCTATTGAAATAATCATACATTAATAGTTGTACTTTTATGCAAAGAAGAGACTGAAAAATAAACGAGAAGTAATGTCTTCATGTTTATATCATGTACAGTTTTATACCATTAAACATTGTAAGTGGTTCAGGAGTCAGTAAAGGCAGAGAACAAGAtgtggtgtaaaaaaaaacacaaaaataaaaatatacgcAATCAGGATAAAAACAAATTCAAACTTAATCATTGGATTTTAAGAAGACATTATTTAAAACATGACTAATTCATAATTGATCACTAAAATACATATTCAGATACATAATTTCATTTCCTAAAGTGCCGTTTTTAAATAAAATTATTCAACTGATTGCATTTAATTGTGTATCACTACATAATACTATTTAAAAAGAGCTGTGATAGAATTACAAATGTGAGAATATCTACCTTGTCTCACACCTTTAGCACAAAACATAAATATCACTTTCCAAAACATGTAAATGTTACGGAAAAAAAGGTGAGATGGGGTTGGAGGTAATATAAATATCTGTGCCTCTTGTGTCTCTTCAAAATCACACCAACACTCACATTCACCTACATAAAGTACTCTATATGATGCCCAGGTGACATTAAATGATTGATAGTATACAGTTTCATAATGATAGCTTTTCTTGTTTTGAACTTTTGGATTATGATGACATGCAACTAGGAAGGCACTGTTAGGGATAGGAACTTTCCCTGTGAGAGAATTCATATTGAGATGCGTGACCTTAAATTGCATGAGAAGATTTTGAATGTGCCATTAAGTTAATTGAATTGTTTCCTGTTAACACTCTGTATTTATTGTATGTGCAGGTACAGTGTGCTTTTTATACTGTATCCTAGAGAATGACTCTTGGATATACACAGCTTAAAATAAAAAGTAGCCACTGCTGTGACACTGTAGAAGAACACCCACTTTGGCTTTATTTCTAGAGTCGTTGCAATACGGAACACTATGTCCACAAGTGAATAGCTGCTCCCCTCTTTGACCCTCACACTCATGCCAGTTACTCTGGATTGAGATGTCACAGCTATAGTTTGGCCTATGTTACTGACTGTAACAGTAGCCCAATGCAGAGTCAAccttccttctctgtctctctctgtgtctctgctctgAGTAGGATAGTGAAGGCATTGTGTCATGGCTTGTCGACCAGTCCTTGTAACAGGTAGAAGTTCCTTGCCGGTGTCTGAGTTGTGCAGTCAGAGGAGCACATCACAGCAGTTCTTTGTCCATTCACACGTATAATACACACATGTGTGCAAACTCCAGCAGATTCTAACTAAATTGTATACCTGGACCGTTTGTTCTCtacacctctttctctccattacTGTGAAAGGACGTACGTCTCAAGTTCTCCTTGACCTTGACAAACTCTGGGGCTTTCACTGTCTCCTCTTGTTTTTCCTGCTCCTTCTCCAACACTTCTAGCTTATCCTTCCTCTTGAGGAGCTCTTGTTCCAGAGGAGAGATCTTCTTTCTGGCCTCATCTTCTTCCTTCCTCTGCTTTATCACTTTTTCCCTCTTCCTGGCCTCTAACACTCGCTGCAGCTCAGGCTTAGATTccacaccaacaacaccacccCTTTTATGGCTCATTAGCAGCTCTCGTTGGAGGTCCTGGTGGCTTTTGGAGGCTTTCACTGGATTAAGGAGCTTTTTGGGCTTGATGAGATCATGATCTCCCTCCATGTAATTGGGCTGGGGGGTGTAGTCAGCCACTGGGGGCTGGTCCCTGTGAGGGTAGTCCTGAGGTGGGTGGCTCCCATCCTGCCTGGGCTGCTGCTCCCACTGCAGGTTCGCATAGGCCG
>TU707358
TTAAGCCCTTTGTACCTCCCTTCTCAGATATGTGGTAATTTGATCTTTTATTGTTATTTATAACAATCATATTGCTGTTATTAAAGCTATTGAAATAATCATACATTAATAGTTGTACTTTTATGCAAAGAAGAGACTGAAAAATAAACGAGAAGTAATGTCTTCATGTTTATATCATGTACAGTTTTATACCATTAAACATTGTAAGTGGTTCAGGAGTCAGTAAAGGCAGAGAACAAGAtgtggtgtaaaaaaaaacacaaaaataaaaatatacgcAATCAGGATAAAAACAAATTCAAACTTAATCATTGGATTTTAAGAAGACATTATTTAAAACATGACTAATTCATAATTGATCACTAAAATACATATTCAGATACATAATTTCATTTCCTAAAGTGCCGTTTTTAAATAAAATTATTCAACTGATTGCATTTAATTGTGTATCACTACATAATACTATTTAAAAAGAGCTGTGATAGAATTACAAATGTGAGAATATCTACCTTGTCTCACACCTTTAGCACAAAACATAAATATCACTTTCCAAAACATGTAAATGTTACGGAAAAAAAGGTGAGATGGGGTTGGAGGTAATATAAATATCTGTGCCTCTTGTGTCTCTTCAAAATCACACCAACACTCACATTCACCTACATAAAGTACTCTATATGATGCCCAGGTGACATTAAATGATTGATAGTATACAGTTTCATAATGATAGCTTTTCTTGTTTTGAACTTTTGGATTATGATGACATGCAACTAGGAAGGCACTGTTAGGGATAGGAACTTTCCCTGTGAGAGAATTCATATTGAGATGCGTGACCTTAAATTGCATGAGAAGATTTTGAATGTGCCATTAAGTTAATTGAATTGTTTCCTGTTAACACTCTGTATTTATTGTATGTGCAGGTACAGTGTGCTTTTTATACTGTATCCTAGAGAATGACTCTTGGATATACACAGCTTAAAATAAAAAGTAGCCACTGCTGTGACACTGTAGAAGAACACCCACTTTGGCTTTATTTCTAGAGTCGTTGCAATACGGAACACTATGTCCACAAGTGAATAGCTGCTCCCCTCTTTGACCCTCACACTCATGCCAGTTACTCTGGATTGAGATGTCACAGCTATAGTTTGGCCTATGTTACTGACTGTAACAGTAGCCCAATGCAGAGTCAAccttccttctctgtctctctctgtgtctctgctctgAGTAGGATAGTGAAGGCATTGTGTCATGGCTTGTCGACCAGTCCTTGTAACAGGTAGAAGTTCCTTGCCGGTGTCTGAGTTGTGCAGTCAGAGGAGCACATCACAGCAGTTCTTTGTCCATTCACACGTATAATACACACATGTGTGCAAACTCCAGCAGATTCTAACTAAATTGTATACCTGGACCGTTTGTTCTCtacacctctttctctccattacTGTGAAAGGACGTACGTCTCAAGTTCTCCTTGACCTTGACAAACTCTGGGGCTTTCACTGTCTCCTCTTGTTTTTCCTGCTCCTTCTCCAACACTTCTAGCTTATCCTTCCTCTTGAGGAGCTCTTGTTCCAGAGGAGAGATCTTCTTTCTGGCCTCATCTTCTTCCTTCCTCTGCTTTATCACTTTTTCCCTCTTCCTGGCCTCTAACACTCGCTGCAGCTCAGGCTTAGATTccacaccaacaacaccaccccTATGAGCCGGGCGGGACAGAAGGTATTTACTAAGGTCATATGCATTTGAATTTAACTTCAATGTTTTCATCTTGTCTCCAGCAGAGGTCACTCTTATCATGCCAAACGCTAAATTCTGATTTTGCTCTGTCATCTGATATCCTGTCCTCACTCATTGATACAACCAAACGTGAAAG

Function

NR:

description
protein FAM107B-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU707362 False 1922 lncRNA 0.40 3 52481627 52489499
TU707358 True 1873 lncRNA 0.38 2 52487523 52489499

Neighbor

gene id symbol gene type direction distance location
LOC118965403 NA coding downstream 27734 52453839 ~ 52453893 (-)
ptprga LOC106583020 coding downstream 755149 51449031 ~ 51726478 (-)
LOC110527973 synpr coding downstream 1274418 51179203 ~ 51207209 (-)
LOC110527971 LOC106583024 coding downstream 1329607 51097457 ~ 51152020 (-)
LOC118965295 NA coding downstream 1390463 51087289 ~ 51091164 (-)
camk1b LOC106583015 coding upstream 94290 52583789 ~ 52658755 (-)
spcs1 spcs1 coding upstream 179953 52669452 ~ 52672489 (-)
gnl3 LOC106583012 coding upstream 201842 52691341 ~ 52696843 (-)
LOC118965419 NA coding upstream 202613 52692112 ~ 52692187 (-)
LOC118965421 NA coding upstream 202946 52692445 ~ 52692518 (-)
G621940 NA non-coding downstream 4097 52472624 ~ 52477530 (-)
G621896 NA non-coding downstream 17202 52411290 ~ 52464425 (-)
G621886 NA non-coding downstream 54696 52393086 ~ 52426931 (-)
G621537 NA non-coding downstream 170068 52311286 ~ 52311559 (-)
G621532 NA non-coding downstream 172811 52308522 ~ 52308816 (-)
G621946 NA non-coding upstream 8664 52498163 ~ 52498467 (-)
G621955 NA non-coding upstream 17228 52506727 ~ 52506971 (-)
G621988 NA non-coding upstream 67744 52557243 ~ 52557556 (-)
G621993 NA non-coding upstream 73050 52562549 ~ 52562760 (-)
G619733 NA other downstream 1523087 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 2175471 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 2545346 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 3184379 49295040 ~ 49297305 (-)
G617632 NA other downstream 3285657 49195604 ~ 49195970 (-)
G622985 NA other upstream 816037 53305536 ~ 53322831 (-)
G625426 NA other upstream 2582980 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 2674993 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 2943957 55420466 ~ 55566988 (-)
G627254 NA other upstream 4201824 56691323 ~ 56696091 (-)

Expression

G621918(LOC106583019) Expression in all Baseline Samples

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G621918(LOC106583019) Expression in each Bioproject

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G621918(LOC106583019) Expression in each Sample
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Co-expression Network