G622061


Basic Information

Item Value
gene id G622061
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 52673023 ~ 52674718 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU707511
TATCACATATCAACTGAATAATTTTCAAAGGAGAGAAAATCATAATTTCTGCCAGTTTCAGAGAAGAGATTTTGACAAAGATCCATGCTGGACACATGGGCATGGAAAAGTGCAAACAGAGAGCACTGGACGTTTTATTTTGGCCTACAATGTGCAAACAAATAGTGGACATTGCTGGTAAAATCTTGCCTGTCTTGAACGACGCCCCTCAAACACCAAAGAGCTAATGTTACCTTACTGTAACCCAGACAGATCCCTGGCAGGTCATGGCAACCGATCTGTTCACCCAGGACAACAAGGACTACAACGTAACAGTGGACTACTACAGCAGATAATTCAAACTCGACAAGCTTCACAGCAACACATCTGCAGCTGTGATACACAAGCTGAATGCAATCTTTGCCAGGAATGGCATTGTAGAGACTTTAATATCTGACAATGGCCCCTCTTACAAATCAAATGAGTTTGAATCCTTCACAAAAGCATGGGAGTTCACACGTCACCACAAGCCCACATTACCCTGAATGTAATGGCTTTCTGAAAAATCTGTGCAGATTGCCAAATCACTCATGGACAACGCAAAAGCAGACAAGAGAGACCCCTACCTCAGTCTCCTTGAATACCACAACACTCCAGTTGACAACTTCAAATCACCAGCGCAGCTGTTGATGAGCCGCAGTCTTCGCTCAATCCTTCCCAGCACCAACCAGCAGCTGCAACCTGAGGTCGTCAGCTAAAAGGAAATGCATGAAAAACGTGCACAGAGACATCAACAACAAAAGCGATACTGCGACAGGTCAGCGAGACCACTGCCACCACTGAACGACAGAGAGTCAGTTACAATCCAGGAGCATGGCCACTGAAAGCCAGCAGTCGTCATACAGCCAGCTGACACTGAATGTTCATATCGCGTCCTCACTGCAGAAGGAGCAGTGTACCGCCGCAATCGTCGTCACCTACTGAACACAAAAGAACAATACACTGACAAGATTAACTGTTCCCCTGAAAGAGAATGTGATGgactaaaacacaaacacagcacAACATACACCATTCTTACCTGCAACACCACAAGAACTGTTGACTGACACAGAAGCATGCTCAGCATCATATCACACAAGGTCAGGAAGAGAGGTCAAGCCCAGAGCTGTCCTAGACCTGTGAAATGTCAAAGGGTGTATGCAGATCACTGCCCTAAAAGAGTTCCAGACTGTAAACTTGTTATTGAAAAGTTGACTTGAAGTGCTTTGGTATTGTATTTGTTTGAAATGTTAAGATGTCATTGCTAAAGTGAAAGTTGAGTTTCTGAGAAACCTTTGTTCTAAAAGTAACAGTATGCTGAATCCTTGTTTCAGAGTCTGTTATGTTGATTCAGTTGGTACAGTATAAATGGTTACTTACCCTGAGAGCATGTATTCAATTGTACAAAGCgtgcaaaacaagacaagacctgacaatagctgtgcagcaacactccccatccaacctgacagagcttgagatgatctgcagcgaagaatggaagaaactccccaaatacaggtgatccaatcttgtagcatcatacccaagaagactcgaggctgtaatcgctgccaaagatgttttaacaaagtactgagtaaatggtctgaatacttatgtaaatgtgatatttctgtttttgtatttttaataaatatgcaaacatttctaa

Function

NR:

description
PREDICTED: uncharacterized protein K02A2.6-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU707511 True 1696 lncRNA 0.43 1 52673023 52674718

Neighbor

gene id symbol gene type direction distance location
spcs1 spcs1 coding downstream 567 52669452 ~ 52672489 (-)
camk1b LOC106583015 coding downstream 14268 52583789 ~ 52658755 (-)
LOC118965403 NA coding downstream 219130 52453839 ~ 52453893 (-)
ptprga LOC106583020 coding downstream 946545 51449031 ~ 51726478 (-)
LOC110527973 synpr coding downstream 1465814 51179203 ~ 51207209 (-)
gnl3 LOC106583012 coding upstream 16623 52691341 ~ 52696843 (-)
LOC118965419 NA coding upstream 17394 52692112 ~ 52692187 (-)
LOC118965421 NA coding upstream 17727 52692445 ~ 52692518 (-)
LOC118965420 NA coding upstream 18307 52693025 ~ 52693099 (-)
LOC118965422 NA coding upstream 19226 52693944 ~ 52694019 (-)
G621993 NA non-coding downstream 110263 52562549 ~ 52562760 (-)
G621988 NA non-coding downstream 115467 52557243 ~ 52557556 (-)
G621955 NA non-coding downstream 166052 52506727 ~ 52506971 (-)
G621946 NA non-coding downstream 174556 52498163 ~ 52498467 (-)
G622088 NA non-coding upstream 46023 52720741 ~ 52720961 (-)
G622357 NA non-coding upstream 174175 52848893 ~ 52857351 (-)
G622358 NA non-coding upstream 174965 52849683 ~ 52857693 (-)
G622359 NA non-coding upstream 175773 52850491 ~ 52858404 (-)
G622362 NA non-coding upstream 185233 52859951 ~ 52860161 (-)
G619733 NA other downstream 1714483 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 2366867 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 2736742 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 3375775 49295040 ~ 49297305 (-)
G617632 NA other downstream 3477053 49195604 ~ 49195970 (-)
G622985 NA other upstream 630818 53305536 ~ 53322831 (-)
G625426 NA other upstream 2397761 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 2489774 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 2758738 55420466 ~ 55566988 (-)
G627254 NA other upstream 4016605 56691323 ~ 56696091 (-)

Expression


Co-expression Network