G622374


Basic Information

Item Value
gene id G622374
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 52878752 ~ 52881611 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU707853
GAAAGGAAAATGCATGTGTTTATACAGTGGAAAtgaaagagacagaaacaggatAAAAATGATAGAAATGGAAGAAATGTGTTCCCTTTTAGTTTCATCTATTCCCTTTGAAACcttgaaaaaacaaaaacaggcaaATACAGAGACAAAGGCCGGTGAGTATGCCATTTGGACCGACCTGGCCTAAAGCAACAGGCTGCGGTACAGAGGTGGAGGAAGACCAACATGGTATTTCACATATTCTGGAGGTTTGTCATGTCTGAATAATCATGAGgcaatctcaaatcaaatcaaatgttattggtcacatacagtacacgtgcttagcagatgttattgtgattgtagcgaaatgcttgtgcttctatttccgacagtgcagcaatatctaacaagtaatgtctaacaatttcacaacaaatacctaatacacacaaatctaagtaaaggaatagaaaaataatatataaagatatggatgagcaatttcatagcggcataggctaagatgcaatagatagtatagaatagtatagaatataatacagtatatacacatgagatgagtaatatgtGAACATTAGGGgcagcaggtggcctagtggttagagcgttggactattaaccaaaaggttgcaagatcaaatcccagagcagACAAGGTAAAACTGCTGTtctgctgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaatatatattaaagtgactactgttaatttattaaagtggccaacgATTTCAATCTGTGCTCGTGATggatatttaacagtctgatgaccttgagatagaagctgtgtttcagtctcttggtcccagctttttgatgcacctcgccttctggatgatagcggggtgaacaggcagtggctcgggtggttgttgtccttgatgacctttttggccttcctgtgacatcgggtgctgtagggtGTCCTGGAGAGCCCTCTCGTTGTGGGCGGTgaagtttccataccaggcagatgctctcaattgtgcatctgtaaaggtttgtgagggttttaggtaacAATCTAAGTTTTGATTTGTGAAATAAAAAATTGTCACTCAAAACTAGTTCCACTGGTGATACTAAAAATAGCCTAGTTATTTTCTATtttcatcacaccctgaccttgtgaTGCAAAATCATAAGCTTATTTACCAAGGAATGGTGTAGGAATGTCAAGGCTGAGCAATTAACAGATCATCAAAGATTGTCAAAAGGTGTTATACACGTTCAGGAGTTATAATGCAGTGCTAGAACACCTGATTGTTGCTTGTTGCTGTTTAATTTATTTGCATAGTCTTACCAATTACTGGTTGATCTGGCAGATAATGTGTTAATATGTTCTTAGTCAATTTACTATGTAAAAtgaatacataaaaaaaatcacaaatctTGAATCAAACAGACCAAGTAATGTCTAGTAGTCTCGCTTTCCAGATTCATGGAGCTCCACAGTGGTTGTGTGAAGAGACTGGGTCGTGTCTAATTGACATGAGGCTAGCAACAATTTCTGACCTGAAAAGTTCTGCATTGAGTATGCTAGTGTTCAGGTCATGTTAGAGTACAGTTGACCACGTAAAGAAGCATTGAGACGTCAAAGTGTGTTTCCTCTCTGATCCTCTGAGCCTCATGGTCCGCAGCACTCAGATAcaggatgaggggaggagggaaaggtGTAGAGTCACttcattacaacacacacaatgtGCCAATCTTTTGTTAGAGATGGCGGGGAGGCGTCCTGTCGTTTAAATAGAAAGAAAATAGCCAAGAGAGCGGAATGGGAAAAGGAAGGGAGACTGGGAAAGACTGACAGATTTaggaattctttttttttttttttgtcttttaagAATTTCCTTTGAAATCTATTAAAAACAATAACAGACATGGCTTTAAACAAAGAGGGGGTGGATACTATGAAAGGTCCTGTATTGTGCACTAAATCAAAAACCAAGGATGCCAGGCATGAGACGGTCACATTGTCCTCTGAAATGGAAGCAAATTACAGAATGGGATACATTATAATAACATGGTGAGATTATGGTAACACATTACAATTACTCACAGTGATAACATTATTTGCCCAGGTTAGGTTCCTATTTAAATATTCAACATGTTACCTGCAGTAAGAATGTGTAAACTCATGACTCATAGCTTAGTTGTCCCCCCACCTCTTCCATAGGTTTTTGGAGTTTATAGCTTTGCTTTACCTCTGAACACAAAGCTGCAGGGCAAATTTACAGATGAAGAAAAGCACCAGGatccccagcattacgcactcaAGCCACCATCAGTACGCACACCTACCTTCCCCCTTCACGCGCATCAGCGCGCATCATTGGActcaattacttgtgtcattaccttccctatatctgtatGTTCCCaggctctgttccctgcttcggGATTCATTGTCATTTGTCTGTGTTACCTGtgttctgacgctgttcctgtcttgttccacGTCTGTTCcctattaaatgtttgactccccgtacctgcttctcctcTCCAGCGTCACTTCTTACACATGGGCTCATGCATATACTCCTGAGCCTCATTCACCAGCCTCGTTGTCTCAATAATGCATTGCTCAATAGTTGCTCTTGTCAGAGATGTTCTCATTGAGTGTTCTTTAAATGGCCCTCTCGTCATTGCCCAATGCTCCGATTAAGCGGAACCCTATTCCATCACTATTGTCTTAAAAACGACGAGGCTTAGAATGTGGTTAAACTTCACATTAAAAAAACTCCAACCACATTTTGGACCTAATCCAAG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU707853 True 2838 lncRNA 0.40 2 52878752 52881611

Neighbor

gene id symbol gene type direction distance location
LOC110527983 LOC106583010 coding downstream 36983 52785667 ~ 52841769 (-)
LOC118965418 NA coding downstream 184276 52694402 ~ 52694476 (-)
LOC118965422 NA coding downstream 184733 52693944 ~ 52694019 (-)
LOC118965420 NA coding downstream 185653 52693025 ~ 52693099 (-)
LOC118965421 NA coding downstream 186234 52692445 ~ 52692518 (-)
pad LOC106583007 coding upstream 208826 53090437 ~ 53105864 (-)
LOC118965299 NA coding upstream 488023 53368443 ~ 53373429 (-)
LOC101268938 cd34 coding upstream 498890 53380501 ~ 53400793 (-)
LOC110527988 plxna2 coding upstream 548336 53429947 ~ 53486228 (-)
LOC118965356 NA coding upstream 645237 53526848 ~ 53530100 (-)
G622366 NA non-coding downstream 6021 52869067 ~ 52872731 (-)
G622364 NA non-coding downstream 17296 52861239 ~ 52861456 (-)
G622362 NA non-coding downstream 18591 52859951 ~ 52860161 (-)
G622359 NA non-coding downstream 20348 52850491 ~ 52858404 (-)
G622358 NA non-coding downstream 21059 52849683 ~ 52857693 (-)
G622347 NA non-coding upstream 16934 52898545 ~ 52903132 (-)
G622512 NA non-coding upstream 241654 53123265 ~ 53123699 (-)
G622514 NA non-coding upstream 243548 53125159 ~ 53125391 (-)
G622517 NA non-coding upstream 253228 53134839 ~ 53136930 (-)
G622528 NA non-coding upstream 258461 53140072 ~ 53140363 (-)
G619733 NA other downstream 1920212 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 2572596 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 2942471 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 3581504 49295040 ~ 49297305 (-)
G617632 NA other downstream 3682782 49195604 ~ 49195970 (-)
G622985 NA other upstream 423925 53305536 ~ 53322831 (-)
G625426 NA other upstream 2190868 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 2282881 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 2551845 55420466 ~ 55566988 (-)
G627254 NA other upstream 3809712 56691323 ~ 56696091 (-)

Expression


Co-expression Network