G622874 (LOC105006631)


Basic Information

Item Value
gene id G622874
gene name LOC105006631
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53150477 ~ 53243842 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU708471
CTTCTGGAACTGCAGGCTGAGGTAGTGGCGCAGGTCCGTGTTCAGAACCTTCCCTGGTTTGACAGTCTTCAAACGAATGGGCTCCCGAAAGTGGCGAATGACTGCATGCGTGTCGCGGTTTGTAAGTCCACTGATGGGGGTTCCGTTGATCTCCAACAAAACGTCCCCAAAATAGGGCATTCTCCCGACGTGGCACACCATCAAATCCAACTTCATCTGGCCCAAGTAAGGGAACTCTCCGTGTTCGGCaccccccagcacctccaccacaTTGCCGAATTCTCCGAGGCTTCCCCATGACACGGCACACTCCTGCACCTTGCTGGACCAATGTTTCTTCTTTTTCAGCGTTCTGGACATACTGTATCCTTTTGATGTTGTCTGTCACTGATCTGAAATTGTCTGTTTGGTTTTGCTTTGTTTCTCAAGCACTAAAGCAGGAGCAAATATGGTCGAACAAAGACTTCTAATCTCGAGTTATTCCCTGGTTCTGATCGGAGTTTCATGTCTCTGTTATAATTGATCATTCACTTTTGGGAGCCAGCCTGCGTCATGGATGAGGTATTCCCGGTAATGTGTAAATAAATGTAATATTGTCCAGGAATAAACCACAGTAATCCTGGAGTAGCACCACTGTCAATAAAAAACAGTACGAGCACCCCAGTAGCTGGCTGTGCTACTGAAAGTATGTCCGTTGCAAAACTCCGAATGTTCTATGTGCGTAAAACAATAAACAAGAAAGCAATACAATGTCTAAATGAATGCATAAATGCGTGTTAGC

Function

NR:

description
membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU708471 True 781 lncRNA 0.46 2 53150477 53243842

Neighbor

gene id symbol gene type direction distance location
pad LOC106583007 coding downstream 44613 53090437 ~ 53105864 (-)
LOC110527983 LOC106583010 coding downstream 308708 52785667 ~ 52841769 (-)
LOC118965418 NA coding downstream 456001 52694402 ~ 52694476 (-)
LOC118965422 NA coding downstream 456458 52693944 ~ 52694019 (-)
LOC118965420 NA coding downstream 457378 52693025 ~ 52693099 (-)
LOC118965299 NA coding upstream 125792 53368443 ~ 53373429 (-)
LOC101268938 cd34 coding upstream 136659 53380501 ~ 53400793 (-)
LOC110527988 plxna2 coding upstream 186105 53429947 ~ 53486228 (-)
LOC118965356 NA coding upstream 283006 53526848 ~ 53530100 (-)
kif17 kif17 coding upstream 345996 53589838 ~ 53602153 (-)
G622534 NA non-coding downstream 4693 53145416 ~ 53145784 (-)
G622528 NA non-coding downstream 10114 53140072 ~ 53140363 (-)
G622517 NA non-coding downstream 13547 53134839 ~ 53136930 (-)
G622514 NA non-coding downstream 25086 53125159 ~ 53125391 (-)
G622512 NA non-coding downstream 26778 53123265 ~ 53123699 (-)
G622987 NA non-coding upstream 60002 53303844 ~ 53325990 (-)
G622991 NA non-coding upstream 74020 53317862 ~ 53319706 (-)
G623013 NA non-coding upstream 162188 53406030 ~ 53411743 (-)
G623018 LOC106581772 non-coding upstream 169088 53412930 ~ 53413188 (-)
G619733 NA other downstream 2191937 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 2844321 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 3214196 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 3853229 49295040 ~ 49297305 (-)
G617632 NA other downstream 3954507 49195604 ~ 49195970 (-)
G622985 NA other upstream 61694 53305536 ~ 53322831 (-)
G625426 NA other upstream 1828637 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 1920650 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 2189614 55420466 ~ 55566988 (-)
G627254 NA other upstream 3447481 56691323 ~ 56696091 (-)

Expression


Co-expression Network