G623173


Basic Information

Item Value
gene id G623173
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53735048 ~ 53737808 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU708817
TCTGAAGTGTGAGGGCATTCTTCAAAGTATGCTGGGCCCATGTGTTCCAGAACAGGGGATCTTTCTCTTGGTCAGGAAACTGAGGCTTCCCCAGGCCTCCCAGGGCCAGACATGAGCAGATGATGAGAAAAAATGTCATGGTCGTAGTGTTACCTGGGATTACCGTCACATACCACATCCCAAACTAGAGTGAGTCGTGCCACAGACGCAGGTCTATCCTCTGAGTGAAGCTCAGAAGTGGTTGGGCCCACCAATCGGCATCACACTAGCCAGCCTGCAGGTGAAATAGCAGAGCAGTGCCAGGATGGCCACCAGGAGAATGCCAGAGAAAAAGAGGGTCACCGCCATCGAGAGTCCATCTCGGCCCATGGTGTCAAGGAGAAAAAGTGTCCAGGTTGGAATTCGTATATAAAAAGAAAGACAGATGTTTCCAGTTTCACCTGCCAGCTCAGTACCTGAGCTCTAGGGGGTGAGTCCCTGTACAGGGTTCAATCTGTTTGAGTGGATCTGGGATTAGGTTTAATAATGTTGGTGAGCTCAGGGCTCAGTGACACAGGCTCCTCCATTCTGGGATAACACTGACCTCAGACACATTCTCCCAAACAGATGACTTTAGCCCTCCAAAATGTGATAGAAGAAGAATTAATAAATCCAGTTCAATCAatgttgtgttccaaatggcatgtTTTTAtcgttttctttcaaaaactctAGGTTCTGGCATTATCCTAGGGTATGCTGTACACTGCTACTGGTTCGATCCCGGGATGAATCACAAcaggccgtgatcgggagtcccataggacggcgcacaattggcccagtgttgtctgggttaggggagggtttagccggggtaggccgtcattgtaaataacaatttcttcttaactgacttgcctagttaaataaaggttcaataaaaataaaatacagaatatCTAT
>TU708815
TCTGAAGTGTGAGGGCATTCTTCAAAGTATGCTGGGCCCATGTGTTCCAGAACAGGGGATCTTTCTCTTGGTCAGGAAACTGAGGCTTCCCCAGGCCTCCCAGGGCCAGACATGAGCAGATGATGAGAAAAAATGTCATGGTCGTAGTGTTACCTGGGATTACCGTCACATACCACATCCCAAACTAGAGTGAGTCTGGAAAATAAGGAGAAATCAGCGCTGATGAAAGAACACACAAAATTATGTTGATTCACAAAAATAAAGTTGAGGAATTTGCTGTAAAGTGCAACAAAGAAGGGGGGAGCAGGTAAGTTTCAACTTAGGCCTTCACAGTGAAAATAAACAGTGGTATTGTGGAAATGTAGTCCCAACCTGACCCCAAAGGCTCTAGTTAGACAGCCTTTAATATAttat

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU708817 False 945 lncRNA 0.47 3 53735048 53737808
TU708815 True 414 lncRNA 0.43 2 53736264 53737808

Neighbor

gene id symbol gene type direction distance location
LOC110527997 LOC106582992 coding downstream 2260 53704724 ~ 53732788 (-)
LOC110527996 NA coding downstream 31091 53636783 ~ 53703957 (-)
LOC110527991 LOC106582993 coding downstream 98770 53624264 ~ 53636278 (-)
LOC110527994 LOC106582994 coding downstream 111142 53613567 ~ 53623906 (-)
kif17 kif17 coding downstream 132895 53589838 ~ 53602153 (-)
LOC110527999 LOC106582948 coding upstream 28258 53766066 ~ 53771880 (-)
LOC110527121 LOC106582947 coding upstream 36547 53774355 ~ 53775511 (-)
LOC110527124 LOC106582988 coding upstream 82652 53820460 ~ 53835329 (-)
LOC110528002 LOC106582983 coding upstream 428743 54166551 ~ 54180404 (-)
LOC110528966 LOC106582980 coding upstream 456907 54194715 ~ 54198212 (-)
G623018 LOC106581772 non-coding downstream 321860 53412930 ~ 53413188 (-)
G623013 NA non-coding downstream 323305 53406030 ~ 53411743 (-)
LOC118965299 NA non-coding downstream 361667 53368443 ~ 53373429 (-)
G622987 NA non-coding downstream 409058 53303844 ~ 53325990 (-)
G623176 NA non-coding upstream 3546 53741354 ~ 53748563 (-)
G623177 NA non-coding upstream 13101 53750909 ~ 53751186 (-)
G623178 NA non-coding upstream 13863 53751671 ~ 53751956 (-)
G623179 NA non-coding upstream 14449 53752257 ~ 53752465 (-)
G623192 NA non-coding upstream 23503 53761311 ~ 53761586 (-)
G622985 NA other downstream 412217 53305536 ~ 53322831 (-)
G619733 NA other downstream 2776508 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 3428892 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 3798767 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 4437800 49295040 ~ 49297305 (-)
G625426 NA other upstream 1334671 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 1426684 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 1695648 55420466 ~ 55566988 (-)
G627254 NA other upstream 2953515 56691323 ~ 56696091 (-)
G627314 NA other upstream 3096777 56834350 ~ 56835092 (-)

Expression


Co-expression Network