G623559


Basic Information

Item Value
gene id G623559
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 54045849 ~ 54051078 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU709213
AGATCTCATTTTTTATTGAGGAGAGTTGAGTTGGGCTTTCCATTTTAGaaaataaaaccaataacaaTATTACAAATAATGAAATTGTTACATCATTCACAGGATTACAGTCAATGTACATTTATACAGAAATACAGGACCTCccacatcagtcacagtggtcagggcCGGCACTGGTCTACAAGGGCTACAACAGGCCAGGGGAGACAGGGCCATCCCCAGCCTGTCTTCACCAACAGCCAGAGAGGTGGGGAGATAGGGGTGGAAGGGGGAAGTGGGGGGATAAGACAACGCAAGGAACATAAGGACATTTGTCACAACTAGACTGCTATTAGCCACTGTGTCAGCAGAGGGAGCTCTAACGCTTTACATATAAGAGATATCCACAGGAGCCATTTTCTACACACTCTGAACTGACTGCCacaaagacaggcaggcagactgcTGCTCGAGACATATTTGGATGGTGCACAAACACAGACCAACGAGTATGAGCAGGCACAGCTTGTGTTTATGCACACTGTCATGTCATTCTAACACTGAGACATAACGGTTTCCGTCCGTCCTTAAAAAATTGGAACACCGAATGGAAATTGTTCTTTGCGTCCACAGTGCATTGAATCAACATCTCAGATACATTGGTTTTGTTTTGATTCATAAATAAAAGAGGGGGGATTGTTATGTATTACTTATCATGACATTGACAGTAAAACATCAACAGTATCTGCAGATACAAGCCATTGAAACAAAGACGAGAGTTTTAGATGTACAAAACAGCAGAGGACAGAGTTCTGTGATACTAGCAAGTTATCTGAGATTCCAAACAAAGACCCTTACTGTAACAAACAGATGTATTCTGGTCTCAATGCTATTATATCATTTTTATGCACTTTAGACATCATTCCTCCATCTGTCTCATGAGCCTGGACATTGAAAAAGGAGAGAACAAAGTATATGCCCTGCACTGTTAAATAATATGCAACGATGGTAGCCAAATGttatatttagtatttttttattttttttattaacggAGCAGACGTTTGAGACATTTTCTTCCTCGTGAAAAATGTAAACATAGAAACACCGATAAGTGCTTTGAAGAAGTGTACATTTACTGTCTTTAAAATGTCTGTTATTTCAGTGGTCTTGGGGGAGAAAAAAATACACTATCATTCAACAAAAAGCAATGTGTGGTTTTTATTCTATTTTAGCTTATACTCGTCTTCAACGAGCTGCAAAATCTCACCAATGCAAAAATGGCCTTGATGCAATCTATGTATAAAGTAACCCATTTACAGTACTTAGGGTGGTGCTTTAAACACTTGCATTGTACACCAGAGAGAACTATCCAGTGAGATAATGACCATCATGGATTCACACAGCAAAGTCTAAAAAACGTTACAATGTGGAAATAATCTTCTCTGAACTAAACCCATCATAATTGCACCAGATTGATCAATCACTTACAATAGGTCCATTACAACAGGCCAATAGGGCGACTGTGCCAAGGGGTTTTATCAGAAGGGCGGGGCTATGAAACCAGTACCATTGAGCTGTACTGTTCTTAAAAGGAGGCTATCAATGTCTTAAAAATAAAAGAAAGAGGGATGACAGCTTTTTCTGTGGCCAATAGCAAAGGATAGCTCTGGATGAACTATCGGTATATAAACAGGGATTCTTTGTGCCATTAGGTTCCGAGgcagaataaataaatacattacacAGCGCTTTCGGCAGTCACCATGGCCCCACACTGTGCAACCAATAAACATGTGTTGACTCAACTCCTTATGAATCTAGCTTCTCTGAACAGAAGTAACACACCAAACCTACGCTTCCAAGAGCGATGCAATAAAAGAAAACCACTTTATTACTACCTATATTTATGTTCCTATCACTCTAAATACGAGTCCACCATTGCTGAATGTTTTAGTTCATCTCATCCTAACAACATGTCCTAGTAATGTATTTTGATTGAACGTCACATGTGGAAGCACACTTTGTTTACACACCGCTCTTTTAATCACTTGATAATCACCTTAAATCACCTTCCTATGACTATCCCCGTCTTCAGCACAAATACTAGTGCTGTGCTGCAGGGCCTGCTTTCTTGAACATATATTGCCACTGCTTGTTCTGACAGTGGGATATCTGTCTATATCTTGGGAAGACTGACTCAGGCTGCCTGGGCTTAACTGAATATCACTGAGGTGCCCTTAAATATTAAAGTGTTGTGCAATGGAAAGGAAGAAAGTACTTTGTGAGCTCTTTTTGAAAGGAAACTGCACGGTCGCATCAGTGACAGTTGGGTCACAGAATCGCTGCCCTTTTTAATCTGGGCAGTGACTAATAGAGTGATGCACTTCCTGCTGTTTCATCTGTCATGGAGTCTGCACTGGAATATGCATGGTGACGCACAGAAATGTTGACGGAAAACTAAAGGGAGGATGATATTACAGAAGCTGGATCAAAACCTCAATGCTCCTGCCCACGTTTATTAAGACTCTGGACGGCTATGTGGGTTAGTGGGTGGAATGAAATGGGGACTAACTGACAGACGAGAGCAAAGGCAGGATTTCACGCATTCTGTGTTTAGGGGTCTAATGCTAAGGCCTACATAGGCCACCTCTCCTGTTCTGCTCAGACAGCAAAGTGCCTTAAAACGGACAGCGGACACCTGATGATGTATATGGAAGAATGACCTTTTGTGGAAGAACCTCTGCTTACATAGCCACCTGCTGTGAAACCAGTACGGGGCCCACAGGTTGTGTGTTATCTACATAAATTCAGTCTGGTCTGTCAACATGACAACATGCAGAGTCACAAAGCAATGGATCTGAAAAAGCAAGAGCACAGAGAACAGTGGGAGGAGAAGAGTGGTAGATCTGAGGCATGTGTTTAGCtctgaggagagatggagggaaccaCTGTCTGGCCAGTGGGGCTGTGATCAGGCAGTGGACTCCCACTAGGAATGGACATGTTTGACCAGCTGGAGCTCCATGTCTGGCTCCTCAGTCTGTATTGAGTACTGAGCCTGTCTCAGTGGATCTGCCCATTAggagctctgcagtagtgatgtAAACTCCGTGTTTTACCATCTCTGGGGAATCCATGGATTTTAACTAGCACAGACCCATCAGGCTCCCTAACCCCTCAAACAACACATCGGCCACAACAACAAAGCCAATGATAGACAGCTCTCCATTCACCAGGCAGTTTTTCCACAGAAGCCATACAGTAAATGCAATACGTATCTATAAAATTAAAGTAGATGTCTCAAGGACTCCAGTTATCTACAATTTGTGAGCACCAACATAATAATGATTTCCTAAAATTCCAAAAGAGCATGGAAGATCCAGATAGTCATCCATTGTCCAGTATGATCTGCGTTCACATACCCTGCCAAGAGACTACTTGGAAAAGCTGTCAATCATCCACGatgtacaataataataatacaaatatgcGTAAAATAATCCACTATCCCATGCTAATGTTACTGCCCTGTTGTGAAAAGATTTGCCCGTGACCGTACCAATGTTAGGGTGTTAAAACCCGAACACTTCAATATAAAATGATTTCAAAAGGAAAACAATTTGGAAGAAAAAAGCTAAATATAATGTATATTTTGTAAAGTGTAACAAATCAAAGCTCTGTGAAATCAATCATTAACTCAGCATGCTATCAAACACTACCCCCTCAGCTTTGGGAGCCGTTGCTTTGTACCACCGAGCACATTTAGcaacacgcacgcagacacaaacacacatatacacccaTGCACCaggcacgcacgcagacacacacaaccaaacacacgGTGAAGCTGAAAACACAGGGAAACCTCAAGACAATGTGAGGACCAAAACATATGTGCACTCCTTGCACTCCTTCTACGTAAACACTATACATCCAtggaggaagtactgtatgtttGCTGCTTATTACACTGATTCTTCAAAGTCCACAACTAACATTTTGGCAAAAaaatcaaataataataacaacagatAAAAACCTCCCTATAGTCACCCTAAGAAAAATGTAAATCCATCACTTCCAGGTATTAGTAACTATGTCCGGCTCATAGTGATCACATCACAGTCCCAATGTCATGTGCATCTGATGTGTACAGGATCTTGACGTCATCATGACATCGTCATGACATCATCTGAGGTACACAGGGACGATGTTCCATTTGGCAGGTTATGTTAATATTGAAAAAATATAAATTTTCCCATGGTGAGAGGAAGCATGGTGAGAGAGAATCTTCATCACAATTTTCACACAGAAAAGGAAATTACTTGATAtgagaaaatgtatttttgtttacATTTCTTTACTTTTGAATTGGTAGATAACTGAATGTCTTTAATTTGTTCATGTCAGTAGTTTCTGCCAGGTCCATTTCATGGTGCTCACACTTATATTATGTCCCAAATCAAAGTCAGGGGAATAGATCAAGTTCCTCAGTCTCTTCTGCTGTTTGCCTTCAGGGAGGCAGCAAATATTTATGTTGCATTTCTGTTTCTGAAGTCAGTTCACCTAGTTTACAAAGAATATATCCGATTAATTTTGAGAGTGTTGGTCTTAAATCACACAGTTTTCATTGTCTTCTTGTCTGTGGCCCTTTTTAAAGGGTAGCCTTTCTAGTCATTTCACCTAGCTTACAATTGTATACCATCTATCGACTCCTAGAGTTCTTAACTTTTTTCTTTACAAAATTCTTTACAAAATTCTTAAAACAAACGTAAAAGTTCaacgtaaataaaataaaaaacatgggTGGAAGATGGTAGTAGAAATGTGTCTCTGGTCAGTAACCTCTCATGATTCTGGTTCCAAGATGGACGGTTGTGAGCCACGTTGATTGACGTCTGGTCATTTAGACATGTTGGCCACAACCTTCCAAAGCTGATCCCGAAGGTTGCGGGGACTTTGGATGAGGgcatagaggaggacaggagagggattGGAAGGGGGGACCAGGGATGGACGGTAGTCTTGTAGGAAACCCAGGTTCACGGCCAAGCAAAAACATATCCACTCCATCCGTGCACCCAGGGTCCTGCATCccaatcccctctcctctgctctgctctcctccgcTCCACTCTGGATGGTCAAACTTCCACAGACTGGATCTGGTTCATGGAGGCACGCATCATCTGCACACTGTTCAGGATCTTCTTCTGGTGGCCTGCTAACGTTACACCCACACTCA

Function

NR:

description
PREDICTED: ephrin type-B receptor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU709213 True 5230 lncRNA 0.42 1 54045849 54051078

Neighbor

gene id symbol gene type direction distance location
LOC110527124 LOC106582988 coding downstream 210520 53820460 ~ 53835329 (-)
LOC110527121 LOC106582947 coding downstream 270338 53774355 ~ 53775511 (-)
LOC110527999 LOC106582948 coding downstream 273969 53766066 ~ 53771880 (-)
LOC110527997 LOC106582992 coding downstream 313061 53704724 ~ 53732788 (-)
LOC110527996 NA coding downstream 341892 53636783 ~ 53703957 (-)
LOC110528002 LOC106582983 coding upstream 115473 54166551 ~ 54180404 (-)
LOC110528966 LOC106582980 coding upstream 143637 54194715 ~ 54198212 (-)
LOC110528004 LOC106582978 coding upstream 151596 54202674 ~ 54485213 (-)
LOC110528967 LOC106565901 coding upstream 756571 54807649 ~ 54961056 (-)
LOC110528005 LOC106582976 coding upstream 947363 54998441 ~ 55036498 (-)
G623584 LOC106582986 non-coding downstream 1783 54043741 ~ 54044066 (-)
G623583 NA non-coding downstream 3130 54041987 ~ 54042719 (-)
G623577 NA non-coding downstream 9482 54036126 ~ 54036367 (-)
G623526 NA non-coding downstream 77043 53968554 ~ 53968806 (-)
G623523 NA non-coding downstream 80797 53964835 ~ 53965052 (-)
G623587 NA non-coding upstream 567 54051645 ~ 54051850 (-)
G623590 NA non-coding upstream 4669 54055747 ~ 54055973 (-)
G623592 NA non-coding upstream 7558 54058636 ~ 54058909 (-)
G623716 NA non-coding upstream 99416 54150494 ~ 54150738 (-)
G623746 NA non-coding upstream 108578 54159656 ~ 54159945 (-)
G622985 NA other downstream 723018 53305536 ~ 53322831 (-)
G619733 NA other downstream 3087309 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 3739693 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 4109568 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 4748601 49295040 ~ 49297305 (-)
G625426 NA other upstream 1021401 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 1113414 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 1382378 55420466 ~ 55566988 (-)
G627254 NA other upstream 2640245 56691323 ~ 56696091 (-)
G627314 NA other upstream 2783507 56834350 ~ 56835092 (-)

Expression


Co-expression Network