XLOC_025438 (cldni)


Basic Information

Item Value
gene id XLOC_025438
gene name cldni
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 30921246 ~ 30927002 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050171
GAGATTCAAAGGAATAAAGAAAGCAGCACAGAGAAAAAGAACAAGTCCAGTCTGGCCTTTTCCTCTTTAGCTGTGCACCCGCCTCTGTTTCATTTCTCCCCACCCATTGCATTCCCCTACAAAAACATCCTCACATCATACCACCTTTCACAGGACGTAACGGTTTCACAAGGTGGGAGACTAACTTCAAGAAAAAAAGTCAAGAGACTAACTACAAAAAGCAGGAAACTTAGAGACTTTCTACAAAGAGCTGCAAATAAAGGATGGGCTCCGCTGGTGTGCAGATTGTGTGTGTGGCTCTGGGAATTTTAGGACTCATTGCTACAGTCGTGACCATTGCTATTCCACAATGGAAGACTTCTGCCTTTATTGGTCAGAACATCATCACTGCACAGGTCTCGGAGGAGGGTCTGTGGATGCAGTGTGTGGTTCAGAGCACCGGTCAGCAGCAGTGTAAAAGCTACGACTCGTTGCTCATCCTGAGCTCAGACCTGCAGGCGGCTCGAGCCATGACCATCATAAGCTGCATGCTGAGCGTCCTGTCCCTGCTCATCCTGTGCGGCGGTGCAGACTTCACCACCTGCATCGAAAACGAAGACGTCAAGCCCAAAGTGACCCTGGTGTCCGCCATCGGCCTGATCCTGGCGGGCCTGCTGGTCATCATCCCAGTCAGCTGGGCCGCCAACAACGTCGTGCGCGACTTTAACAACCCGATGGTTCCTGAGGCACAAAAGAGGGAGCTGGGTCCTTGTATTTACATAGGCTGGGCTTCAGGAGTGCTGCTCATACTGGCCGGGGGTCTGCTGTGCTGCTTCAGCAGGCCTCGTTCCAGCGGATCCAGCGGAGCCGCCAAATACTACAGCAACAGCGCCTCAGCGCCCAGCAaaaattatgtgtaaataaatgcaaaagatgAGCATTTAAGATCATTCTAGGTATAGTACGTACTAGATAACCCGTCTAAGGTAGCGAATAAGTCTGTAGTTTGTAGGAAAATCGCCCTCATACGACTTAACCGTGGTTTATTTACAGTAGCCTATATTAATCATGTTTTATTTAAGCAAAATTTTTACAAATGCTGTGTTAAGTTGTGTGTTGTAAAAGGTTACCACATGaatttgttttgggtttgttttgttttatgtgatattttgtttctggcaaaaccatggttaattttggTGAGAGTGGAACTGGAAAAGGTCAAAATGGAGAAAGATGTAAATATTACTTGTTTGGAGTCTCTGAACTGTCCTACAAATACTGTCTTTAAGCATTTTAataatcagttttatatctttttttatgataatttaCTACTGCCTTTTCTTAGAGCTGCTAATAAACACAACTTCAGGGATGGGACAGAGCTTGTGTCCAAAATACTTTCATTCAGGTCACTGTATAACACATGTGTGCCAGTCCTTATTATTTTCAAAACCATGACTGCACTCATTTCTTTTGAGTATTAATGTTGCATAACAGCTACTACTAGACTGTGTTTCAGATGTATTCCTACTAGCGTTTACTCAGTGTGTAATCAGTTTACTTTTGGGGTTTTTAATGAGACCATTTTACTTTATTATGTAATAGACAATgttgtctttaaaaaatgtatgttgtaAGACCAGACTAAGGAGTTTAAGTCACTGGTACTTTTCAAAAACATATTTAGGATATGGGAAATACtgtatcattttgtttttaatactgtATAATTTCGTGCTTTCTTTGTGCATTAGGTCATAATCATTTCCACTGTCTGCCTGTTCAATAAAACCGACTGATTCAGA
>TCONS_00050172
GATGGGCTCCGCTGGTGTGCAGATTGTGTGTGTGGCTCTGGGAATTTTAGGACTCATTGCTACAGTCGTGACCATTGCTATTCCACAATGGAAGACTTCTGCCTTTATTGGTCAGAACATCATCACTGCACAGGTCTCGGAGGAGGGTCTGTGGATGCAGTGTGTGGTTCAGAGCACCGGTCAGCAGCAGTGTAAAAGCTACGACTCGTTGCTCATCCTGAGCTCAGACCTGCAGGCGGCTCGAGCCATGACCATCATAAGCTGCATGCTGAGCGTCCTGTCCCTGCTCATCCTGTGCGGCGGTGCAGACTTCACCACCTGCATCGAAAACGAAGACGTCAAGCCCAAAGTGACCCTGGTGTCCGCCATCGGCCTGATCCTGGCGGGCCTGCTGGTCATCATCCCAGTCAGCTGGGCCGCCAACAACGTCGTGCGCGACTTTAACAACCCGATGGTTCCTGAGGCACAAAAGAGGGAGCTGGGTCCTTGTATTTACATAGGCTGGGCTTCAGGAGTGCTGCTCATACTGGCCGGGGGTCTGCTGTGCTGCTTCAGCAGGCCTCGTTCCAGCGGATCCAGCGGAGCCGCCAAATACTACAGCAACAGCGCCTCAGCGCCCAGCAaaaattatgtgtaaataaatgcaaaagatgAGCATTTAAGATCATTCTAGGTATAGTACGTACTAGATAACCCGTCTAAGGTAGCGAATAAGTCTGTAGTTTGTAGGAAAATCGCCCTCATACGACTTAACCGTGGTTTATTTACAGTAGCCTATATTAATCATGTTTTATTTAAGCAAAATTTTTACAAATGCTGTGTTAAGTTGTGTGTTGTAAAAGGTTACCACATGaatttgttttgggtttgttttgttttatgtgatattttgtttctggcaaaaccatggttaattttggTGAGAGTGGAACTGGAAAAGGTCAAAATGGAGAAAGATGTAAATATTACTTGTTTGGAGTCTCTGAACTGTCCTACAAATACTGTCTTTAAGCATTTTAataatcagttttatatctttttttatgataatttaCTACTGCCTTTTCTTAGAGCTGCTAATAAACACAACTTCAGGGATGGGACAGAGCTTGTGTCCAAAATACTTTCATTCAGGTCACTGTATAACACATGTGTGCCAGTCCTTATTATTTTCAAAACCATGACTGCACTCATTTCTTTTGAGTATTAATGTTGCATAACAGCTACTACTAGACTGTGTTTCAGATGTATTCCTACTAGCGTTTACTCAGTGTGTAATCAGTTTACTTTTGGGGTTTTTAATGAGACCATTTTACTTTATTATGTAATAGACAATgttgtctttaaaaaatgtatgttgtaAGACCAGACTAAGGAGTTTAAGTCACTGGTACTTTTCAAAAACATATTTAGGATATGGGAAATACtgtatcattttgtttttaatactgtATAATTTCGTGCTTTCTTTGTGCATTAGGTCATAATCATTTCCACTGTCTGCCTGTTCAATAAAACCGACTGATTCAGACATTTGTATGTGCGATCAATTGTTGACACATGAATAAAGCTTTGataaaataacactttattttaagtcctataaaacatattaaaatgggctccaaataaaacatcacataaaaaaagttaaatcccTGAAGAACAATATTTGGTGTGCAAAGGACAGCAAAATGACATCCGAGAAAATCTTTCACATGAATCTAGAAATCTTGCACCTTTTACGTTTTCATTATTCGCACATCTTGCTCATGtccatttgcatttttaaaattcatattttcaaTTCATCTGGGGTCTGTCTTCATCTACTTGCTCTCCAGGTCATTCACTCGCTTGGTCAAATCCTCCACCATCTCCTTCAGCTTCTTCACCTCATTCTGCAAGGCCTGAACATCCTGTACGAGACATAGAAAGGAAGGCAGCATGAGTTTAATAGTAGCAGAAGTTCAGTTTGCCGTGTTTGGGGTTGAATAAATCACATCAGGACACTTACCCCACTGTCTGACTGTCGGTTGCATGAGGATGATGATGTGGTGGACATCAAGCTCTTGATGACTTTGAACTCTTTGTTCTTGGTTGTAGCCACAAAACCGTCTTTCAAGGAGATCAGGATTGGTTCGCCATCTTTGCCTGCAAACCAATCATCCGCCTCCACTGATGGCTCTGGACCCACCGTGTTGGGGTAAAG

Function

symbol description
cldni Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including gonad; immune system; integument; periderm; and visual system. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 116. Orthologous to human CLDN17 (claudin 17); CLDN6 (claudin 6); and CLDN9 (claudin 9).

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010328-9 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including gonad; immune system; integument; periderm; and visual system. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 116. Orthologous to human CLDN17 (claudin 17); CLDN6 (claudin 6); and CLDN9 (claudin 9).

Ensembl:

ensembl_id ENSDARG00000054616

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050171 False 1793 mRNA 0.42 3 30921246 30926321
TCONS_00050172 True 2212 mRNA 0.42 2 30922947 30927002

Neighbor

gene id symbol gene type direction distance location
XLOC_025437 NA coding upstream 13120 30907892 ~ 30908126 (+)
XLOC_025436 NA coding upstream 48086 30868418 ~ 30873160 (+)
XLOC_025435 NA coding upstream 225439 30694174 ~ 30695807 (+)
XLOC_025434 NA coding upstream 265688 30643162 ~ 30655558 (+)
XLOC_025432 NA coding upstream 415097 30497721 ~ 30506149 (+)
XLOC_025439 NA coding downstream 16286 30943288 ~ 30948454 (+)
XLOC_025440 prf1.9 coding downstream 41174 30968176 ~ 30975502 (+)
XLOC_025441 prf1.1 coding downstream 53850 30980852 ~ 30988333 (+)
XLOC_025442 cox6a2 coding downstream 112921 31039923 ~ 31042102 (+)
XLOC_025443 si:dkey-66i24.7 coding downstream 131462 31058464 ~ 31060609 (+)
XLOC_025429 BX649540.1 misc upstream 672210 30248739 ~ 30249036 (+)
XLOC_025446 NA non-coding downstream 170931 31097933 ~ 31105653 (+)
XLOC_025447 NA non-coding downstream 242217 31169219 ~ 31170874 (+)
XLOC_025449 NA non-coding downstream 304807 31231809 ~ 31239563 (+)
XLOC_025455 BX324157.1 non-coding downstream 861519 31788521 ~ 31788637 (+)

Expression


Co-expression Network