XLOC_002544 (tmem150c)


Basic Information

Item Value
gene id XLOC_002544
gene name tmem150c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5041977 ~ 5058823 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004739
CATTTACGTCTCGCAATGTCTGTCTGAGAATTATCACACCGAGTCTGTGAGGCCCAACACATGAATTAAGGACTTCAAATCATATGGTAGAGCACAGAGCTCACAAACGGCTTAATGCAAACGATGTCAGTGATCGAGTCCTAATGAAATGAAGACGACACGGCTTTTATTCGCGACGGAAGAGAGTGCTGTTTTCAAGACTGAAGGCTGTCGGCACATCAAGCATTCTGGAAGAAATCTTGAGGCTGGGTTGTTTTGTTGACGTTCATAAGGAGACATGAGGAAGTGCAGTCCATGGATGTTTCTGCCTATAATGTTTTCTTTCTTCACAGCCGCAGGCCTTTGGGTGGTGTATTTCATTGCTGTGGAGGATGAGAAAATCACACCACTCAGTTCTGAGTACAAGAGGTCAGAATCAAAATCTCCTCCATATAtcagCATTGCAGGCAATGCTCCACCTGCCAGCTGTGTGTTCAGTCAAGTCATGAACATGGCAGCCTTTGTAGGCTTCATTCTTGGAGTACTGCGATATTTGCAGCTCAAACCCAGAGTCCACAAACCCTGGCTCAACATCGGCAGTCTGGTGGCTTTGTCTCTGGCCTGCTTCGGGATGACTCTAGTTGGCAACTTTCAGCTTTCCAATGATGAGGAGCTGCACAACATAGGCACGTCCATGACCTTTGGCCTGGGAACGCTTTTCTGCTGGGTCCAGTCCTTCATGACCCTGAAGGTGAACTTGCGCAATGAAGGCAAGCGTGCAGGAATCCCTCGCTTCCTGCTGTCCGGCGCCGTGACTTCCTGCATGCTGCTCTATTTTGCTCTGATGGCTCAGCGGCTCCACATGCACGCTGCCCGGGCCCAGTGGGCACTGGTTATGTTCTTCCTCACATACCTGGGCACATTTGCCATCGAGTTTCGCCACTACCATTTTGAGATTGTTTGTAGCGACGACCAGGACCCTCCGCTCAGCCTGTCTGAAAGCTTTTCAGAAGTCTCAGAGTATCAGTCTGACCAACTCTAATCTCTTTTTTATGGTTTCTGTCAGCCCCTCGTTCTTCCAGTGGTTTTTCAATTTTGTCATGCATGTAAACCGAATGTATTCTCTATAGAACAACTTTTGGATGAGTTCGTTTTTCTGAATGTGTAGATAGAGTTTTGCAAAAGCGACAAACTCATGAAATGCACAACCATTTACTGTGATGCGCTCCGCGTTTATGTGAAGTAACCAGGACTTTTTGAAGAATATCAAACTACATTGACAGgatttaattaattctttaaaaaatgttgattatTAAATAGATTGTTAGCCC
>TCONS_00004740
ATGAGGAAGTGCAGTCCATGGATGTTTCTGCCTATAATGTTTTCTTTCTTCACAGCCGCAGGCCTTTGGGTGGTGTATTTCATTGCTGTGGAGGATGAGAAAATCACACCACTCAGTTCTGAGTACAAGAGGTCAGAATCAAAATCTCCTCCATATAtcagCATTGCAGGCAATGCTCCACCTGCCAGCTGTGTGTTCAGTCAAGTCATGAACATGGCAGCCTTTGTAGGCTTCATTCTTGGAGTACTGCGATATTTGCAGCTCAAACCCAGAGTCCACAAACCCTGGCTCAACATCGGCAGTCTGGTGGCTTTGTCTCTGGCCTGCTTCGGGATGACTCTAGTTGGCAACTTTCAGCTTTCCAATGATGAGGAGCTGCACAACATAGGCACGTCCATGACCTTTGGCCTGGGAACGCTTTTCTGCTGGGTCCAGTCCTTCATGACCCTGAAGGTGAACTTGCGCAATGAAGGCAAGCGTGCAGGAATCCCTCGCTTCCTGCTGTCCGGCGCCGTGACTTCCTGCATGCTGCTCTATTTTGCTCTGATGGCTCAGCGGCTCCACATGCACGCTGCCCGGGCCCAGTGGGCACTGGTTATGTTCTTCCTCACATACCTGGGCACATTTGCCATCGAGTTTCGCCACTACCATTTTGAGATTGTTTGTAGCGACGACCAGGACCCTCCGCTCAGCCTGTCTGAAAGCTTTTCAGAAGTCTCAGAGTATCAGTCTGACCAACTCTAA
>TCONS_00004741
CATTTACGTCTCGCAATGTCTGTCTGAGAATTATCACACCGAGTCTGTGAGGCCCAACACATGAATTAAGGACTTCAAATCATATGGTAGAGCACAGAGCTCACAAACGGCTTAATGCAAACGATGTCAGTGATCGAGTCCTAATGAAATGAAGACGACACGGCTTTTATTCGCGACGGAAGAGAGTGCTGTTTTCAAGACTGAAGGCTGTCGGCACATCAAGCATTCTGGAAGAAATCTTGAGGCTGGGTTGTTTTGTTGACGTTCATAAGGAGACATGAGGAAGTGCAGTCCATGGATGTTTCTGCCTATAATGTTTTCTTTCTTCACAGCCGCAGGCCTTTGGGTGGTGTATTTCATTGCTGTGGAGGATGAGAAAATCACACCACTCAGTTCTGAGTACAAGTAAGGAAAATCCTGCACTTTTTCATGCAAATCTTTCAGATATTTATGAGCCCATCATTCAGTCTATTTATtgacttatgtaaatgtgtgtggtagatatatatttattatgtatatgtgatacacacactgttacatatatatttaaatgtatagacaatatacatgcatattttatatcttaatatgaataaataaattctaaaatatattcttgcatgtgtgaatttatatatacgtaataaatatacacagtacacacttaaattatgtcaaaacaagcattttggatgcgattaatggTGATAATTTTATGCCTGCTGCTAGTTTTTATATTAAACATAGTATTTTGAGTAATTGATGTGCGATACAGTTTATAAAGTCATATTTCTCGTCTTTTAGTGTGTCTATTCTATGAGAgatctttgtttaccaaacaaaatCCAGTGCTTCTAATTGGATTTAAATTGTAAACctt

Function

symbol description
tmem150c Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TMEM150C (transmembrane protein 150C).

GO:

id name namespace
GO:0010506 regulation of autophagy biological_process
GO:0005764 lysosome cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090112-5 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TMEM150C (transmembrane protein 150C).

Ensembl:

ensembl_id ENSDARG00000069590

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004739 False 1313 mRNA 0.46 9 5041977 5058823
TCONS_00004740 False 744 mRNA 0.51 7 5042269 5053589
TCONS_00004741 True 883 lncRNA 0.35 5 5052862 5058823

Neighbor

gene id symbol gene type direction distance location
XLOC_002543 hnrnpd coding downstream 17457 5000623 ~ 5024520 (-)
XLOC_002542 mat2al coding downstream 61827 4969634 ~ 4980150 (-)
XLOC_002541 snx30 coding downstream 80048 4940767 ~ 4961929 (-)
XLOC_002540 NA coding downstream 119926 4919323 ~ 4922051 (-)
XLOC_002539 NA coding downstream 223371 4812304 ~ 4818606 (-)
XLOC_002545 sec31a coding upstream 33688 5092511 ~ 5135788 (-)
XLOC_002546 NA coding upstream 163092 5221915 ~ 5223942 (-)
XLOC_002547 CU466285.1 coding upstream 466570 5525393 ~ 5527364 (-)
XLOC_002548 syk coding upstream 475020 5533843 ~ 5581487 (-)
XLOC_002549 st8sia4 coding upstream 608578 5667401 ~ 5684326 (-)
XLOC_002538 NA non-coding downstream 458957 4573554 ~ 4583020 (-)
XLOC_002537 NA non-coding downstream 464125 4508389 ~ 4577852 (-)
XLOC_002534 NA non-coding downstream 942794 4095871 ~ 4099183 (-)
XLOC_002550 NA non-coding upstream 729797 5788620 ~ 5821584 (-)
XLOC_002554 CABZ01032180.1 non-coding upstream 891640 5950463 ~ 5950578 (-)
XLOC_002555 NA non-coding upstream 978058 6036881 ~ 6037746 (-)

Expression


Co-expression Network