G625472 (LOC106582968)


Basic Information

Item Value
gene id G625472
gene name LOC106582968
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55164492 ~ 55188756 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU711245
TTGTTTTCGATGATTGTTTTTATTCGCATCAACTTGATTTGAAGATTTACATTcattttgaaaacatgttttcaagcTTGACAATAACTTCTCGGAATGCGAGTGATACTGATAAACTCACATAGTGACACAAACCATTACTTACATATGTTTAAGCTCCTCTCACAATCGAGAGGAAGTAACTTATTCTGACTTAAATGCAGATATCATTTTTTTGAATTATGACATACGATGCTGTTTGCATGTTTTAATATCAATATCAAAACAGGGCAAATAAGAATTACATTTTTTCACTAGTTTTTCCACTAGGAAGACAGTGAACACCATAtcataaattattatttttccacaggaaaaaatacaaaatatattcactttataaaAATGAAATAGAATCTTATTCGTGAAACGAAAATAAAAACAGAAGATTCAATTGATGCTCTTGTAATCAAGAGAGGATCATTTAAATACTGACATTGTTAAATGTCCTTTTCATTAAAACTAAAACTTATAGTATAAACTCCTGCAAATGCAGAAAATGAGGATGAAATCGTCAGTAATGTGGAGTAGGAAATGTCCTGCTTGAGCATATGAGGAAGAAGATCTCTTCCTATTCTCATTACTGTCTAACATCCATAACATTATTCTTAGACCAACATGGTCCATTGTGCTTGTCTGAGAGTGGAGCTCCAGTCTGTAGGACTCTACCAGGGCCTCCAGAGGGCGCTGTTAACTGGACCCTTCTCTTTGCTGTGCTGGGCTGGAGAGCTCAGCTGAGGCAGGTCACTCTCCCTTCTGTTCTTATCAGAGGATGGCTGAAGTATCTTGAAGTGGCTCAGCAGTCTTCTCTGGAATGTGTCTTCACCTCATCCTTGGACAGGAAGTGCACAATCTCTTGGACACTCCTGGAGTAAGCCTGATTGACAGGAGCTTAACATGAGGAGTAGTTCACTGGCTGGTACTGTTGTTGTCGTATCAGGAAGAAAACTGTCAGCTCCAGGATGCCTGCTTTCTCCATCTTGGAGTCAGACTGATGGTTGAGGATCTCTGGACCCAGGAGAGACTTGAGCTGCTCAAGGCTGTTGTTGATGTCGATGTCTGAATAACTTCTCCACCACTGACT
>TU711241
GGGATTATTCTCTTTACCGATGCTGTGCTGGACTGGTGAGCTCAGCTGAGGCAGGTCACTCTCCCTTCTGTTCTTATCAGAGAATGGTTGCAGGCTCTGAAAGTCCAGCAGCAAGTGGCTCAGCAATTTTCTCTGAGATGGTGTCTTCACCTCATCTATGGACAGGAAGTGTACAATCTCTTGGACACATCTGGAGTAACCCTGATTGACAGGTGCTGAGCATGAAGATGAGCTCACTGGCTGGTACTGTTTCTGTTGTCTCAGCAAGCAAACTGTCATCTCCAGGATGTCTGCTTTCTCCAGCTTGGAGTCAGACTGCTGGTTGAGGATCTCTGGACCCAGGAGAGACTTGAGCTGCTCAATGCTGCTGTTGATACGATCTCTGCGTAATTTCTCCACGACTGGCTTTCT

Function

NR:

description
transcription factor HES-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU711245 False 1123 TUCP 0.39 2 55164492 55172200
TU711241 True 411 lncRNA 0.49 3 55171062 55188756

Neighbor

gene id symbol gene type direction distance location
LOC110528015 NA coding downstream 8816 55160922 ~ 55162246 (-)
LOC110528009 LOC106582972 coding downstream 12904 55132795 ~ 55158158 (-)
LOC110528010 LOC106582973 coding downstream 38676 55106749 ~ 55132386 (-)
LOC110528008 atrap coding downstream 69834 55079890 ~ 55101228 (-)
LOC110528006 LOC106582975 coding downstream 118275 55047293 ~ 55052787 (-)
LOC110528968 LOC106582963 coding upstream 7098 55195854 ~ 55196454 (-)
LOC110528016 LOC106582964 coding upstream 13383 55202139 ~ 55204250 (-)
LOC110528017 LOC106582961 coding upstream 20826 55209582 ~ 55225927 (-)
LOC110528018 LOC106582958 coding upstream 40965 55228600 ~ 55309126 (-)
LOC118965300 NA coding upstream 101771 55290527 ~ 55292821 (-)
G625477 NA non-coding downstream 402 55170394 ~ 55170660 (-)
G625414 NA non-coding downstream 72785 55097743 ~ 55098277 (-)
G625404 NA non-coding downstream 124971 55044189 ~ 55046091 (-)
G625531 LOC106582960 non-coding upstream 124748 55313504 ~ 55314949 (-)
G625560 NA non-coding upstream 171068 55359824 ~ 55360081 (-)
G625568 NA non-coding upstream 179884 55368640 ~ 55368849 (-)
G625570 NA non-coding upstream 180589 55369345 ~ 55369642 (-)
G625426 NA other downstream 95666 55072479 ~ 55075396 (-)
G622985 NA other downstream 1848231 53305536 ~ 53322831 (-)
G619733 NA other downstream 4212522 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 4864906 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 5234781 49660022 ~ 49936575 (-)
LOC110528020 LOC106582955 other upstream 244700 55420466 ~ 55566988 (-)
G627254 NA other upstream 1502567 56691323 ~ 56696091 (-)
G627314 NA other upstream 1645829 56834350 ~ 56835092 (-)
G627323 NA other upstream 1658206 56846962 ~ 56852301 (-)
vamp3 vamp3 other upstream 1664811 56853567 ~ 56869607 (-)
G625410 NA non-coding downstream 121618 55042455 ~ 55042874 (-)

Expression


Co-expression Network