XLOC_025448 (clec19a)


Basic Information

Item Value
gene id XLOC_025448
gene name clec19a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31177972 ~ 31188131 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050182
CCCtaatctccacacacacacacacatatgcacacacatacacacactccagATCTCAATCTCATCTCTCTTGCATTAAACATGCACTGTTGGGAATTGTTTTTAGCCCTACTGTTCAGCGGCTTCTCAGCGTGGGCTCTGCCTTCAACTAACATCAAGATCACACAAGCATTGCCTATGCAGCTCTCAGACTCAAACCAGCCTGTGACATGTCCACTGTTCTGGACTGAATTTGAGGGTTACTGTTACCGCTTCTTTCCCCTGAACCGCACATGGGCTGAGGCAGATCTGTACTGCGCTGAGTTCTCAAACGGACACAAATCTGCCAAACTCACCTCTGTCCACAGCTGGGAAGAAAATGTGTTTGTCTACGATCTTGTGAACAGCCGTATGCCAGGAATTCCAACAGATATTTGGATTGGCCTGCATGACAGAAGACAGGAGGGCACTATGGAGTGGACAGATGGGTCACCCTTTGAGTACAGTTACTGGGATGGAAATCAGCCAGATGATGGGATTCATCGCATCCCTGAGGAGGAGGACTGTGTGGAGATTTGGTACAGACAAAACAGTGCTCTGAGGTCTTGGAATGACAACAACTGCGATAAGGCTTTTCCATTCGTCTGTAAGATTCCAACCCTGGAAAACTAACCACAGATTGTTTATCAAGTTCATCATCAACAACACTGACACTAGGAACAAAGTGTCCGCAGATCTAAATCCCTCCATCATAGATGGGCTCTTTCCAGCTCTACTATAGGCTCTTCACATGCACTTCTGTCCCGTCTCCTGCCCCCATCACTGCTGTCATAATGCTGTTTTCTGGCTCCTCTGAGGCAGTGAGTCATGACACACACATTCCTGCATTTAACGCTATTAGAAATGAACTTTTTGTTTCCCTCTCCAGAGGTAGTTGATTATGTGGGCTATTCTAGAATTGCGGGTACATTGAATCTTTAGCATGTTCTATTAgttcttaaaaacaaaaactttattgAAAACGTTTTGAATAGCATCACATATTCTATCGATTATctctaaaaaataatgtttgaaaTTTGTGTTTaccattttgaaaatattaacGTAAAGATTTACGTTAGATATACCTATATTTGACCGTCTCTGTCCCTGAATCTTCAATTATCATGAAACTATTGTCTAGTTGTCATCTTTTTTGTGTTTACTCTACTAAGTTGAACAAACATTTGCATGAAACatctattttctgtattatttgtaattttgg

Function

symbol description
clec19a Predicted to enable signaling receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in heart rudiment; heart tube; lens; and solid lens vesicle. Orthologous to human CLEC19A (C-type lectin domain containing 19A).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080917-46 Predicted to enable signaling receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in heart rudiment; heart tube; lens; and solid lens vesicle. Orthologous to human CLEC19A (C-type lectin domain containing 19A).

Ensembl:

ensembl_id ENSDARG00000115545

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050182 True 1249 mRNA 0.42 5 31177972 31188131

Neighbor

gene id symbol gene type direction distance location
XLOC_025447 NA coding upstream 7098 31169219 ~ 31170874 (+)
XLOC_025446 NA coding upstream 72319 31097933 ~ 31105653 (+)
XLOC_025445 si:dkey-66i24.9 coding upstream 80442 31093455 ~ 31097530 (+)
XLOC_025444 si:dkey-66i24.8 coding upstream 87411 31087509 ~ 31090561 (+)
XLOC_025443 si:dkey-66i24.7 coding upstream 117363 31058464 ~ 31060609 (+)
XLOC_025449 NA coding downstream 43678 31231809 ~ 31239563 (+)
XLOC_025450 c1ql3b coding downstream 208018 31396149 ~ 31430489 (+)
XLOC_025451 ccdc43 coding downstream 412462 31600593 ~ 31605331 (+)
XLOC_025452 fzd2 coding downstream 433643 31621774 ~ 31624213 (+)
XLOC_025453 mylk5 coding downstream 473995 31662126 ~ 31699298 (+)
XLOC_025429 BX649540.1 misc upstream 928936 30248739 ~ 30249036 (+)
XLOC_025439 NA non-coding upstream 229518 30943288 ~ 30948454 (+)
XLOC_025437 NA non-coding upstream 269846 30907892 ~ 30908126 (+)
XLOC_025436 NA non-coding upstream 304812 30868418 ~ 30873160 (+)
XLOC_025455 BX324157.1 non-coding downstream 600390 31788521 ~ 31788637 (+)
XLOC_025458 NA non-coding downstream 730031 31918162 ~ 31919131 (+)
XLOC_025473 NA non-coding downstream 1105642 32293773 ~ 32297003 (+)
XLOC_025475 NA non-coding downstream 1158003 32346134 ~ 32347493 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_02982693_02987269 CLEC19A coding CI01000069 null 2982563 ~ 2987527 (+)