G625531 (LOC106582960)


Basic Information

Item Value
gene id G625531
gene name LOC106582960
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55313504 ~ 55314949 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU711336
CGGTTGTTAGATCAGAAGTCTGTAGCAGAAGCAGAAAAAGTTAATTTAAACTAAACAAAGTGGGTCACTAGAGAGGTTACAGCCATCCTTTCATTGCAGACTTATGAAAGGTTTCTCTGAACATCAGAGACAGGTCTCACCTTTCTTGAGTGCTGTGGGGAGTCCCAACTGTCTCAACTGTGGCTCCATGGAGTGAGGGAACTGTTCCAGGGGTCCTTCATCAAGTGTTATGGCCATCCCTGCCTTGTTTCCTGCTCGTGCAAAATCCATCTCTTTAAACTGGCTGAAATACTCTTGTACCTCTTCCTTGGTTTTATTTGTGAATAGCACACCCACTTCTCCCCTCAGAAACCGGCTGACCTTGTGCAAATTGTCTTTGTACTCGCTTGTTGATCCTTTACCTATAGCGATCATCATGACTTTGTTTTTGCCAAAAAAGAATCGACTGTGTTTCCAGGCTGTCCTGATGTCTTTCAGTTTGTTGTTCCTCATGTTTGCCACAGAGAAGATGAACAGATGCTTGTAAATGTCCACACATTTCCGCAACTCTTCTATTAAGTTCTGTTTAGTTTCCAGACCCTTCTTGGCTGTTTTTGTTAGTGAAACTTTCTTGTCTCTCTTTGACTTCGGCATGGTCCTCACGTTGTGTAGACCTATGGAGGAAAAGGACCCCACGTGTTTCTGTC

Function

NR:

description
mRNA turnover protein 4 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU711336 True 686 lncRNA 0.44 6 55313504 55314949

Neighbor

gene id symbol gene type direction distance location
LOC110528018 LOC106582958 coding downstream 4378 55228600 ~ 55309126 (-)
LOC118965300 NA coding downstream 20683 55290527 ~ 55292821 (-)
LOC110528017 LOC106582961 coding downstream 87577 55209582 ~ 55225927 (-)
LOC110528016 LOC106582964 coding downstream 109254 55202139 ~ 55204250 (-)
LOC110528968 LOC106582963 coding downstream 117050 55195854 ~ 55196454 (-)
LOC110528020 LOC106582955 coding upstream 105517 55420466 ~ 55566988 (-)
LOC110528021 dj-1 coding upstream 252173 55567122 ~ 55571727 (-)
pax7b pax7b coding upstream 305604 55620553 ~ 55699308 (-)
LOC118965301 NA coding upstream 330034 55644983 ~ 55649872 (-)
LOC110528023 errfi coding upstream 412480 55727429 ~ 55735021 (-)
G625472 LOC106582968 non-coding downstream 124748 55164492 ~ 55188756 (-)
G625477 NA non-coding downstream 142844 55170394 ~ 55170660 (-)
LOC110528015 NA non-coding downstream 151317 55160922 ~ 55162246 (-)
LOC110528008 atrap non-coding downstream 212387 55079890 ~ 55101228 (-)
G625560 NA non-coding upstream 44875 55359824 ~ 55360081 (-)
G625568 NA non-coding upstream 53691 55368640 ~ 55368849 (-)
G625570 NA non-coding upstream 54396 55369345 ~ 55369642 (-)
G625572 NA non-coding upstream 58449 55373398 ~ 55373642 (-)
G625573 NA non-coding upstream 60037 55374986 ~ 55375326 (-)
G625426 NA other downstream 238108 55072479 ~ 55075396 (-)
G622985 NA other downstream 1990673 53305536 ~ 53322831 (-)
G619733 NA other downstream 4354964 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 5007348 50300364 ~ 50306278 (-)
G627254 NA other upstream 1376374 56691323 ~ 56696091 (-)
G627314 NA other upstream 1519636 56834350 ~ 56835092 (-)
G627323 NA other upstream 1532013 56846962 ~ 56852301 (-)
vamp3 vamp3 other upstream 1538618 56853567 ~ 56869607 (-)

Expression


Co-expression Network