XLOC_025451 (ccdc43)


Basic Information

Item Value
gene id XLOC_025451
gene name ccdc43
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31600593 ~ 31605331 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050185
GTGCGGACACCCCAACTCACTCTCAGGACCCCAGCCAGGGAAGATGGCGGCGCCCGAACAAATCGCCGGGGAGTTTGAAAACTGGCTGAATGAGCGGCTGGACTCGCTTGAAGTTGACCGAGAAGTTTACGGAGCTTATATACTTGGGGTGCTTCAGGAGGAGGAGAGCGATGAAGAGCAAAAGGACGCTCTTCAAGGCATTCTGTCCGCTTTTCTGgaagAAGAGACGCTTGAGGAGGTTTGCCAAGAGATCTTGAAACAGTGGACAGAGTGCTGTAGCAGATCTGCAGCAAAGAGCGATCAGGCGGATGctgAAGTTCAGGCCATTGCTAGTCTGATAGAGAAGCAGGCACAGATTGTGGTCAAACAGAAGGAGGTGTCAGAAGATGCCAAGAAGAGGAAAGAGGCTGTTCTTGCTCAATATGCCAATGTCACAGACGACGAAGATGAAGCTGAAGAGGAGGAGCAAGTCCCAGTGGGGATACCCAGTGACAAATCCCTGTTCAAAAACACCAATGTGGAGGATGTTTTGAATCGCCGCAAACTGCAGCGTGACCAGGCCAAGGAAGATGCACAGAAGAAGAAAGAGCAGGACAAGATGCAACGTGAAAAAGACAAACTGTCCAAGCAGGAGCGCAAGGACAAAGAGAAGAAACGCACACAGAAGGGAGAGCGCAAGAGATAGAATATAGACGCAGAGGAAAACTGCAGGAAAGCTTTTGTAGACTGTATAAAACCAAGGTTATTTTATCTAGAGGAGAAAACTACGATGAGCAAACAGTGTCCCAACTCATAATGTTATAACGTATGCATCCATATTTAGTTTTGTATCTgaaattgtttattgtttgataaTATAGGGCCTAATGAGCTACTCTATTGGCTTGTACAATAACCTATAACAGTCCAGCAAACAGCGAAAAATTTGCCATAACCCTTATTCAATATTTACAGGTGCTAACTGCTATTTGTTATGGTTATGAACCCACAACACTTCCATTCATCATAGGAATGTAGATGATATATATCAAACCTGGGAGATTGATGTCCCTACAGTGAATTAAAACCCTGAAGCTTTATAAAGTTTGTAACAAAAATTCATATGAATCAAACTCTTCAGAGGAGACATAATTACTTGCTAGCTTAAATTTAGGATttattattacaacaacaacTGCTTGACCCACAAGAACAAACCTCATGGGTTCTTGCAAACATGATTGAGCTTCCGTGAccaaatttaaatgcagtatttGTAAATGAATGAAAGCTTCAGTTTAAGTCTGTTAATTATATGAAGTGACTGTGACCAATACAGATTTCACATTTCATCTCATTTTGAAGAGTTAAGAGTTTTGGTTGAACAGATTTGCAGTGGATGGACAGAAATCCTCATTTGCATTCTAAATATTAACAATTTGTTACATATTGTAGATGAGTAAATATATCATTTGAATTTTTTgataaactaaccctttaatgacAAAATCTCTAGCAGATCAAAAACATGTTCAAGTCACATTTTAACCCGAcatctaaaataatatttagctTTATGAACATTTTACCATAAATCTCACTACTGCAGTGCTTGGCctaagttttaattttatttgttaaaatgtttatggTGTAAAGATGTGACTTTTACATGTTTTCTGTAAGATTCACTCTTAAATTGTTACCAGCAGATAATCAACACATTGTCTAAAATCTCTTTATTATTgccctgtgtttttttttaaatagtcagtGAAcatgtatctctctctctccatttaATACATGCTAACTCAAGATACAAAGATATATTTATTGAGCTCACAAGCTTTTTCACAATAACATAAAACCAATAGAAGCCTTCTTGTTGTGTAGCAATATATGGAGAGGGCTAAGAGACGACCCAAAGACATAATCACAACTGCTAATCATTGCTAAATGGGGACATGTGTAGTTTGTTTAAAGTTCATTGGTGTCAACAAACAGCTcttgttagacatttctgtatttttgttaTAGGGCAGTGAACTTCTATAAGGgtatgtttgtgtgcatatatatgaATTGACAACTGTTTGTATGAAGCTGCTACATTTTGTGCCAATACCTTGTAGACTGCCTTTACATATACTACAATGGGCTGCACTGTAGGCAAAGTGATATCTCTTAAACTTGTCTAGTAGCTTATACGATCAAGTGGTTTAAGATTTTTACTATCAGAACTTCGATATTTAACATTTTGTATGCTAAAACATCCGAA
>TCONS_00050186
AGGACCCCAGCCAGGGAAGATGGCGGCGCCCGAACAAATCGCCGGGGAGTTTGAAAACTGGCTGAATGAGCGGCTGGACTCGCTTGAAGTTGACCGAGAAGTTTACGGAGCTTATATACTTGGGGTGCTTCAGGAGGAGGAGAGCGATGAAGAGCAAAAGGACGCTCTTCAAGGCATTCTGTCCGCTTTTCTGgaagAAGAGACGCTTGAGGAGGTTTGCCAAGAGATCTTGAAACAGTGGACAGAGTGCTGTAGCAGATCTGCAGCAAAGAGCGATCAGGCGGATGctgAAGTTCAGGCCATTGCTAGTCTGATAGAGAAGCAGGCACAGATTGTGGTCAAACAGAAGGAGGTGTCAGAAGATGCCAAGAAGAGGAAAGAGGCTGTTCTTGCTCAATATGCCAATGTCACAGACGACGAAGATGAAGCTGAAGAGGAGGAGCAAGTCCCAGTGGGGATACCCAGTGACAAATGTATCCTTTTTCACACCATCTCTCACAGGTCTCTCTAGTGGAACATCTCGATCACGAGAATGAGCTGATGTGTCCTAGCACTTTAAAGTCTTCATCATCCGGAGGATGCTGAGACTTTTGTTTCAGTATGTTGatttacttccaactgaaatgaaatattgagtagggggggCAGGTGTTTTTATTTCATCATTCCCTCACatcaaactaacggtaagaggggcATGGTGACGAATATTGTTGCTAAAAATGCCAAACTGACATCATCAAAGAAGGACCACCACTACGAACACAGAAGCAagtggtcagactttgattgaagattaccaaaacattttctttcattGGATTAACTTGCATCAATGTGTGATAGCAAAATAAACTTTGTCAATTTTGTTTTCACACGGACTTTAAAGGTATAGTTCCCCCAAGACGTGCTGTTAATTAACTTGCACTCAGGCCGTACAAGATGTAGGTGCAGTAACTGAAGAATGAAGAAGTTTTGGCTGAAA
>TCONS_00050187
GAACAAATCGCCGGGGAGTTTGAAAACTGGCTGAATGAGCGGCTGGACTCGCTTGAAGTTGACCGAGAAGTTTACGGAGCTTATATACTTGGGGTGCTTCAGGAGGAGGAGAGCGATGAAGAGCAAAAGGACGCTCTTCAAGGCATTCTGTCCGCTTTTCTGgaagAAGAGACGCTTGAGGAGGTTTGCCAAGAGATCTTGAAACAGTGGACAGAGTGCTGTAGCAGATCTGCAGCAAAGAGCGATCAGGCGGATGtgctttgctttgttttgttttaagctgAAGTTCAGGCCATTGCTAGTCTGATAGAGAAGCAGGCACAGATTGTGGTCAAACAGAAGGAGGTGTCAGAAGATGCCAAGAAGAGGAAAGAGGCTGTTCTTGCTCAATATGCCAATGTCACAGACGACGAAGATGAAGCTGAAGAGGAGGAGCAAGTCCCAGTGGGGATACCCAGTGACAAATCCCTGTTCAAAAACACCAATGTGGAGGATGTTTTGAATCGCCGCAAACTGCAGCGTGACCAGGCCAAGGAAGATGCACAGAAGAAGAAAGAGCAGGACAAGATGCAACGTGAAAAAGACAAACTGTCCAAGCAGGA

Function

symbol description
ccdc43 Orthologous to human CCDC43 (coiled-coil domain containing 43).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1587 Orthologous to human CCDC43 (coiled-coil domain containing 43).

Ensembl:

ensembl_id ENSDARG00000054446

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050185 False 2260 mRNA 0.38 5 31600593 31605331
TCONS_00050186 False 985 mRNA 0.45 4 31600617 31603222
TCONS_00050187 True 602 nonsense_mediated_decay 0.49 5 31600648 31603704

Neighbor

gene id symbol gene type direction distance location
XLOC_025450 c1ql3b coding upstream 170104 31396149 ~ 31430489 (+)
XLOC_025449 NA coding upstream 361030 31231809 ~ 31239563 (+)
XLOC_025448 clec19a coding upstream 412462 31177972 ~ 31188131 (+)
XLOC_025447 NA coding upstream 429719 31169219 ~ 31170874 (+)
XLOC_025446 NA coding upstream 494940 31097933 ~ 31105653 (+)
XLOC_025452 fzd2 coding downstream 16443 31621774 ~ 31624213 (+)
XLOC_025453 mylk5 coding downstream 56795 31662126 ~ 31699298 (+)
XLOC_025454 dcaf7 coding downstream 111930 31717261 ~ 31726949 (+)
XLOC_025455 BX324157.1 coding downstream 183190 31788521 ~ 31788637 (+)
XLOC_025456 BX324157.2 coding downstream 245673 31851004 ~ 31870003 (+)
XLOC_025429 BX649540.1 misc upstream 1351557 30248739 ~ 30249036 (+)
XLOC_025439 NA non-coding upstream 652139 30943288 ~ 30948454 (+)
XLOC_025437 NA non-coding upstream 692467 30907892 ~ 30908126 (+)
XLOC_025458 NA non-coding downstream 312831 31918162 ~ 31919131 (+)
XLOC_025473 NA non-coding downstream 688442 32293773 ~ 32297003 (+)
XLOC_025475 NA non-coding downstream 740803 32346134 ~ 32347493 (+)
XLOC_025481 CR936975.1 non-coding downstream 869330 32474661 ~ 32477285 (+)

Expression


Co-expression Network