G625652


Basic Information

Item Value
gene id G625652
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55507723 ~ 55714702 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU711465
cattttttatTCAGACTAACACAAAATGTTGAGtaagtccaggggtatgaatactttaaggcactgtatgtcattaCTCTCCTATGTTTGACGGACTTAAATATTGCGTCCACCATCCAACAGGGTCACATTTTAAATACAGTACAACTTATATAGCATACATAAATGTTTCacaaatccTCTATATTTGTATGTCATGCTCTATAAATGGTGCATAAACATACACAATGAGGTATGTGACATTTGGCAATTCACCCTACATTGTGCCTGGTTATGACATCCTTTATAGAGTATGACATACACTTAGATTATATATGAAGACTTTATGTACGACATACGTTATTCTTTCATTTAAAATGGGACCTCAAAAGGTTAAATGACTGTCCCACAGGGGCCTCTATGCAAAATACA
>TU711464
cattttttatTCAGACTAACACAAAATGTTGAGtaagtccaggggtatgaatactttaaggcactgtatgtcattaCTCTCCTATGTTTGACGGACTTAAATATTGCGTCCACCATCCAACAGGGTCACATTTTAAATACAGTACAACTTATATAGCATACATAAATGTTTCacaaatccTCTATATTTGTATGTCATGCTCTATAAATGGTGCATAAACATACACAATGAGGTATGTGACATTTGGCAATTCACCCTACATTGTGCCTGGTTATGACATCCTTTATAGAGTTTGACATACACTTAGATTATATATGAAGACTTTATGTACGACATACGTTATTCTTTCATTTAAAATGGGACCTCAAAAGGTTAAATGACTGTCCCACAGGGGCCTCTATGCAAAATACATTAGTTTCATCTTGGCAGCACGTCAGTAGTGGAATATCTGCAACTACAGCTGACAGGGTTAAGCCAAATTGTAAACCAACTTACACAAATTGTTCCTAGCGACTGAGCTAATATAAAATACTTCCTGAAAATCGTAACAAATGTCTTTGCTTTTGAGATGTGAATATGTAGCACTTATCataatggtgaaataaaaaaagaaaatttGTAGGAAAAGCACTGCTTAAGAATATTCATAGTTCATATAGAACAAAGGCTTTCACTTGGAAACAGTTAACCTTTTGGGAGGAGAATGTCATTTCTAGCTGTCCTTTGTGTACAGTAACCACACCATGCTATGCTTGACAGTCCCCCATGCTCCAGCTATCATAGTTGCTGCTGCTTAACTCCATCCTCTGGAGCTGCTTCCTCTGCTAGTTCTGCCAGGGCCCTGTGACGCTCTGTTTCTGTCACCGTCATGGGATGCAGGGGGAAGAACCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU711465 False 411 lncRNA 0.35 3 55507723 55714702
TU711464 True 893 lncRNA 0.39 2 55713788 55714702

Neighbor

gene id symbol gene type direction distance location
LOC110528018 LOC106582958 coding downstream 198597 55228600 ~ 55309126 (-)
LOC118965300 NA coding downstream 214902 55290527 ~ 55292821 (-)
LOC110528017 LOC106582961 coding downstream 281796 55209582 ~ 55225927 (-)
LOC110528016 LOC106582964 coding downstream 303473 55202139 ~ 55204250 (-)
LOC110528968 LOC106582963 coding downstream 311269 55195854 ~ 55196454 (-)
LOC110528023 errfi coding upstream 12727 55727429 ~ 55735021 (-)
tfeb LOC106583139 coding upstream 767671 56482373 ~ 56593011 (-)
tmem183a tmem183a coding upstream 884541 56599243 ~ 56604594 (-)
myog tmyogenin coding upstream 1002174 56716876 ~ 56720187 (-)
mdm4 mdm4 coding upstream 1042364 56757066 ~ 56772426 (-)
G625651 NA non-coding downstream 2322 55505172 ~ 55505401 (-)
G625649 NA non-coding downstream 7289 55500199 ~ 55500434 (-)
G625645 NA non-coding downstream 12155 55495361 ~ 55495568 (-)
G625641 NA non-coding downstream 24551 55482854 ~ 55483172 (-)
G625632 NA non-coding downstream 38508 55468920 ~ 55469215 (-)
G625805 NA non-coding upstream 78263 55792965 ~ 55793222 (-)
G625812 NA non-coding upstream 87336 55802038 ~ 55802343 (-)
G625832 NA non-coding upstream 111359 55826061 ~ 55826268 (-)
G625862 NA non-coding upstream 154236 55868938 ~ 55869191 (-)
G625865 NA non-coding upstream 156055 55870757 ~ 55872516 (-)
LOC110528020 LOC106582955 other downstream 73651 55420466 ~ 55566988 (-)
G625472 LOC106582968 other downstream 335523 55164492 ~ 55188756 (-)
G625426 NA other downstream 432327 55072479 ~ 55075396 (-)
G622985 NA other downstream 2184892 53305536 ~ 53322831 (-)
G619733 NA other downstream 4549183 50956271 ~ 50958540 (-)
G627254 NA other upstream 976621 56691323 ~ 56696091 (-)
G627314 NA other upstream 1119883 56834350 ~ 56835092 (-)
G627323 NA other upstream 1132260 56846962 ~ 56852301 (-)
vamp3 vamp3 other upstream 1138865 56853567 ~ 56869607 (-)
LOC110528040 NA other upstream 1337489 57052191 ~ 57059527 (-)

Expression


Co-expression Network