G625870


Basic Information

Item Value
gene id G625870
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55879503 ~ 55879761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU711693
gagctttacaccactccagccgacgcttggcattgtgcatggtgatcttaggattgtgtgcggctgctcggccatggaaacccatttcatgaagctccctatgaacagttattgtgcttacgttgcttccagaggcagtttgaaactcggtagtgaatgttgcaactgaggacaaacTATTTTTACTCGCTTCGGGTACTCGgctgtcccattctgtgagcttgtaccacttcgtggctgaaccgttgttgctcgtaga

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU711693 True 259 lncRNA 0.49 1 55879503 55879761

Neighbor

gene id symbol gene type direction distance location
LOC110528971 LOC106583048 coding upstream 81219 55792291 ~ 55798284 (+)
LOC110528024 LOC106583050 coding upstream 164790 55711635 ~ 55714713 (+)
LOC110528022 LOC106583050 coding upstream 371337 55505406 ~ 55508166 (+)
LOC110528970 LOC106582957 coding upstream 463424 55333097 ~ 55416079 (+)
LOC110528019 LOC106582960 coding upstream 563600 55313448 ~ 55315903 (+)
foxp4 LOC106583051 coding downstream 227906 56107667 ~ 56295859 (+)
mdfi LOC106583052 coding downstream 495438 56375199 ~ 56376062 (+)
ppfia4 LOC106583137 coding downstream 726131 56605892 ~ 56716813 (+)
LOC110528029 mdm4 coding downstream 871043 56750804 ~ 56766586 (+)
LOC110528032 LOC106583134 coding downstream 937520 56817281 ~ 56842143 (+)
G625866 NA non-coding upstream 3980 55875174 ~ 55875523 (+)
G625863 NA non-coding upstream 6983 55870149 ~ 55872520 (+)
G625847 NA non-coding upstream 34255 55844868 ~ 55845248 (+)
G625846 NA non-coding upstream 36611 55842374 ~ 55842892 (+)
G625394 NA non-coding upstream 80822 55798441 ~ 55798681 (+)
G625878 NA non-coding downstream 8090 55887851 ~ 55888078 (+)
G625885 NA non-coding downstream 13168 55892929 ~ 55893151 (+)
G625886 NA non-coding downstream 13509 55893270 ~ 55893601 (+)
G625960 NA non-coding downstream 113012 55992773 ~ 55995187 (+)
G625964 NA non-coding downstream 122905 56002666 ~ 56004143 (+)
G625222 NA other upstream 406660 55472468 ~ 55472843 (+)
G625038 NA other upstream 665592 55211705 ~ 55213911 (+)
LOC110527126 LOC106582962 other upstream 671240 55207615 ~ 55208708 (+)
LOC110528007 LOC106582974 other upstream 807116 55053185 ~ 55074095 (+)
G626004 NA other downstream 191293 56071054 ~ 56078929 (+)
G626417 NA other downstream 602633 56482394 ~ 56485304 (+)
snrpe ruxe other downstream 1439941 57319669 ~ 57323047 (+)
G627035 NA other downstream 1663121 57542882 ~ 57596051 (+)
LOC110528055 LOC106583107 other downstream 2038273 57917801 ~ 58055214 (+)

Expression


Co-expression Network