G625878


Basic Information

Item Value
gene id G625878
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55887851 ~ 55888078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU711701
agcctttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgtaggtgttgaagcacgttggctaggaaaaactccctagaaaggccaggctatgaggggtggccagtcctcttctggctatgccaggtagtgattataacagaacatggccaagatgttcaaatgttcataaatgaccagcatggtcaaataat

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU711701 True 228 lncRNA 0.45 1 55887851 55888078

Neighbor

gene id symbol gene type direction distance location
LOC110528971 LOC106583048 coding upstream 89567 55792291 ~ 55798284 (+)
LOC110528024 LOC106583050 coding upstream 173138 55711635 ~ 55714713 (+)
LOC110528022 LOC106583050 coding upstream 379685 55505406 ~ 55508166 (+)
LOC110528970 LOC106582957 coding upstream 471772 55333097 ~ 55416079 (+)
LOC110528019 LOC106582960 coding upstream 571948 55313448 ~ 55315903 (+)
foxp4 LOC106583051 coding downstream 219589 56107667 ~ 56295859 (+)
mdfi LOC106583052 coding downstream 487121 56375199 ~ 56376062 (+)
ppfia4 LOC106583137 coding downstream 717814 56605892 ~ 56716813 (+)
LOC110528029 mdm4 coding downstream 862726 56750804 ~ 56766586 (+)
LOC110528032 LOC106583134 coding downstream 929203 56817281 ~ 56842143 (+)
G625870 NA non-coding upstream 8090 55879503 ~ 55879761 (+)
G625866 NA non-coding upstream 12328 55875174 ~ 55875523 (+)
G625863 NA non-coding upstream 15331 55870149 ~ 55872520 (+)
G625847 NA non-coding upstream 42603 55844868 ~ 55845248 (+)
G625846 NA non-coding upstream 44959 55842374 ~ 55842892 (+)
G625885 NA non-coding downstream 4851 55892929 ~ 55893151 (+)
G625886 NA non-coding downstream 5192 55893270 ~ 55893601 (+)
G625960 NA non-coding downstream 104695 55992773 ~ 55995187 (+)
G625964 NA non-coding downstream 114588 56002666 ~ 56004143 (+)
G625968 NA non-coding downstream 120101 56008179 ~ 56011041 (+)
G625222 NA other upstream 415008 55472468 ~ 55472843 (+)
G625038 NA other upstream 673940 55211705 ~ 55213911 (+)
LOC110527126 LOC106582962 other upstream 679588 55207615 ~ 55208708 (+)
LOC110528007 LOC106582974 other upstream 815464 55053185 ~ 55074095 (+)
G626004 NA other downstream 182976 56071054 ~ 56078929 (+)
G626417 NA other downstream 594316 56482394 ~ 56485304 (+)
snrpe ruxe other downstream 1431624 57319669 ~ 57323047 (+)
G627035 NA other downstream 1654804 57542882 ~ 57596051 (+)
LOC110528055 LOC106583107 other downstream 2029956 57917801 ~ 58055214 (+)

Expression


Co-expression Network