G625968


Basic Information

Item Value
gene id G625968
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56008179 ~ 56011041 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU711794
gggttaaggtttaggataggcattaactctgaatggttatggtaagggttaaggtttaggataggcattaactctgaatggttatggtaagggttaaggtttaggataggcatgAACTTCCccatcttaaggttaggcattaactctgaatggttatggtaaggtttaaggtttaggataggcattaactctgagtggttatggtaagggttaagttttaggataggcattaactctgaatggttagggtaggggttaaggtttaggataggcattaactctgaatggctatggtaaggtttagggtttaggataggcattaactctgaatggtcatggtaagggttaaggtttaggataggcattaactctgaatggttatggtaaggattaaggtttagaataggcattaactctgaatggctatggtaagggttaaggtttaggataggcattaactctgaatggttattgtaagggttaaggtttaggttaggcattaactctgaatggttatggtaagggttaaggtttaggataggcattaactctgaacggttgtggtaagggttaaggtttaggataggcattaactctgaatggttatggtaagggctaaggtttaggataggcattaactctgaatggttatggtaagggttaaggtttaggataggcatgAACTTCCccatcttaaggttaggcattaactctgaatggttatggtaaggtttaaggtttaggataggcattaactctgaatggttatggtaagggttaaggtttaggttaggcattaactctgaatggttatggtaagggttaaggtttaggataggcattaactctgaatggttgtggtaagggttaaggtttaggataggcattaactctgaatggttatggtaagggttaaggtttaggataggcattaactctgaatggttgtggtaagg

Function

NR:

description
complement C3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU711794 True 956 lncRNA 0.39 3 56008179 56011041

Neighbor

gene id symbol gene type direction distance location
LOC110528971 LOC106583048 coding upstream 209895 55792291 ~ 55798284 (+)
LOC110528024 LOC106583050 coding upstream 293466 55711635 ~ 55714713 (+)
LOC110528022 LOC106583050 coding upstream 500013 55505406 ~ 55508166 (+)
LOC110528970 LOC106582957 coding upstream 592100 55333097 ~ 55416079 (+)
LOC110528019 LOC106582960 coding upstream 692276 55313448 ~ 55315903 (+)
foxp4 LOC106583051 coding downstream 96626 56107667 ~ 56295859 (+)
mdfi LOC106583052 coding downstream 364158 56375199 ~ 56376062 (+)
ppfia4 LOC106583137 coding downstream 594851 56605892 ~ 56716813 (+)
LOC110528029 mdm4 coding downstream 739763 56750804 ~ 56766586 (+)
LOC110528032 LOC106583134 coding downstream 806240 56817281 ~ 56842143 (+)
G625964 NA non-coding upstream 4036 56002666 ~ 56004143 (+)
G625960 NA non-coding upstream 12992 55992773 ~ 55995187 (+)
G625886 NA non-coding upstream 114578 55893270 ~ 55893601 (+)
G625885 NA non-coding upstream 115028 55892929 ~ 55893151 (+)
G625878 NA non-coding upstream 120101 55887851 ~ 55888078 (+)
G626033 NA non-coding downstream 136997 56148038 ~ 56148362 (+)
G626096 NA non-coding downstream 251112 56262153 ~ 56262632 (+)
G626300 NA non-coding downstream 298696 56309737 ~ 56309999 (+)
G626310 NA non-coding downstream 312699 56323740 ~ 56323941 (+)
G626323 NA non-coding downstream 331140 56342181 ~ 56369509 (+)
G625222 NA other upstream 535336 55472468 ~ 55472843 (+)
G625038 NA other upstream 794268 55211705 ~ 55213911 (+)
LOC110527126 LOC106582962 other upstream 799916 55207615 ~ 55208708 (+)
LOC110528007 LOC106582974 other upstream 935792 55053185 ~ 55074095 (+)
G626004 NA other downstream 60013 56071054 ~ 56078929 (+)
G626417 NA other downstream 471353 56482394 ~ 56485304 (+)
snrpe ruxe other downstream 1308661 57319669 ~ 57323047 (+)
G627035 NA other downstream 1531841 57542882 ~ 57596051 (+)
LOC110528055 LOC106583107 other downstream 1906993 57917801 ~ 58055214 (+)

Expression


Co-expression Network