G626285


Basic Information

Item Value
gene id G626285
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56289480 ~ 56295845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU712144
TATTTTATTGCATTTTATAATGCCATTGTCAATAATTAGTACAGATTACATGCAACTAGACCTACTGTACAGTTGTTTTATTGTCTGCATGGACAGACACAAGAAGATTCAGGTTACAAATACACAGATATATGTGTGTTTTATACAGCATGAGGAAAGGACAGTGACTGGCATTACATGGCCACCCAGGGAAGGGGGAAAGGGCAGTGACTGGCATTACATGGCCACCCAGGGAAGGGGGAAAGGGCAGTGACTGGCATTACATGGCCACCCAGGGAAGGGGGAAAGGGCAGTGACTGGCATTACATGGCCACCCAGGGAAGGGGGAAAGGGCAGTGACTGGCATTACATGGCCACCCAGGGAAGGGGGAAAGGGCAAAGGTCTCGGTGGCAAAGTCGCCTTTTTTAAAACCTCTTTTAGACCATCTTAAAAACCACTGCCTGCTCCTACTTTACCAATTCCCCTGGGTCACACTTTCAAAAAATGAAGAAACAGAACAAAATAAAAAGATAAAAGAGAGGTAAACAGAAACTAAGTAATGTTACAGAAAGTCACTGAATGTACACACATTCCTAAGATACAACCAGAGGACAGCTGAATGTACACACATTCCTAAGATACAACCAGAggacagccagaggacagctgaAGTGGTAgttccattttttgggggggctgtgAAGTTCATAATAACATGGGCAACTGTCCTTTACGTTCCCTTTTCCTCAACATGACACCGAAGAGCTGTCCAATCATAGAGCAGGGGCGGGGCCAATTAGGTCCCTGGAGTCACTAATGATCCAATAGGAAGAGTGCTTGTCCAAGAGATGATAGCGATGGTGATAGCGAAGAATGGTTTGAGGTATGGGAAGTAGCTTGTGGTAGATCAGTGCCTAGGGTTGGTTTGGTTAcggttgtggttatggttgtggTGGTCTGTTAGCTTGTAAGCCATGGCCACTCACAACACCTTTGGTTAGGATTCTAATTGGACAAATGCCATCAGGTGTTTGATTGAGGGCCACGCCCAGTTGTCCTATTGAGTGATTGACCGCTGTAAGTTAAAGGTCATCAAAGGAATGACTGTggtcaggggtcagaggacaCATATTGGCACATAAAGGACCCACAACATCACCTTTACATTGGTCCATCTTTAAAAGCAAGAGAGGGGCTACATATTTTCTTCAATgattttcctctttctctcattttttctgaggttttggtcCTGTCTTAGAGAAAAGTCCTTCTGAGGTATCAACAATACATAACGAAGTCAACTTGttgttttactgttgtttttctttttctttcctTAAAAATGCAGTACAGAGACAAAAGGTATCAAAATAGACCTAGCTAAGATAAATATACAAACAGCTGTTACCTAAACCACTTATCTAACTTtaattcttttattttttttgagatAATACACTTAAAAAATCATCGTCCCAGACGTTTTTATGAAGAAaacgagagaaaaaaagaaaggaaTAACTATTCAACAAAGATACCTGCAGCACTTAATATGATAAATACATACACTTCAGCATTAGCAATACAGTATAGGAATCCAAGCTGGAAGCTTTACAAAAACTAAATGAAGAAAAGAGAAAATCAAAAAGACATAATGGTAAAGAATGCCCTCGAGAGCTAAGCCAAGTGTTAATATAGAATAATACATCATAACAGCCAAACCAGAGAAGGAACAGAAGTGTCTATGGCGATCTGTCAACATCATCAACGAATGTCAATCTACATCTTGATAAAACAGCTTGGCAAACAGGTGTACCTTAAAGGATGAGAATTCAAACATCATATATTTACTGAATGCAGCAGCGCCTCTTTCGTGAGAGTTTGGATCATaacaataatagtagtagtaatcattCATTCCTTTGTAAGCTGTTATTATTGTCCGTCTCCCAGCAAGCTCTGTGTTTGTCTTTGGATAGTATCTTCAGTTACTCAGAGCCTCTCCTCAGCTGTCTGAACCAAGGGGCCAACAGGGGCCCGGCTCCTAGTGACAGGGGCCACTATTCGCCGTGAAGGGCCAGCTCCATGTCACAGGGCTTTAATTCCCAGCTCTGAGGCTTATTGACTGATACTAAGGGCCCTTTCGACTGAACACTGACTACAGCCGGTGAGTGTGTTTCCTTTATCGCTGCCATCTTAAAGCTGTTCTCTCCATTCATGTGTAGTGTGGGCCGCTGGCgtgtactagtgtgtgtgtggcccaatGGCGGGTGCAGGGCACTCATACATTCTGCCCATCATCACTCCTGACAACCAGCTTCCTGCCCCATTGAGTCGCAGCTAACGACTGGACTATCATTGGCTGCCGGCAAAGCCGGCTCATAAATATGCGTGCATACAATTAGAGCACCCAGTTAAGAGGCTTTTCACAGAGTTTTATGATAATGGACAGTACGGAGAGAGCCAATAATACACAGCTGAGAGTAGACCTTTTAAACATGGTGACCACTTCACTCTTCACTCTTAGGAGAACGCACCAGTTATCTGGTGTTTTAGGAGAGGTAGTCTATCTTTAACGGGGTGTAATGTTGTTGTAACGTCTCTTTGTTTTTGCGCTCACGCTCATGAATTTGGAGTTCAGATAGCCAGACAAGCTTTTTCAGCCCCACTTAATGTGTATTAACAGTAAGCTGTGTTTTGGTATATTTCACTATTATTATTgaggaagattttttttttaaaccagacaTATTTCTGGTCTCCAGTCTCCCATTTGCTTTTATTGTGAACCATTTTGAAAAGGAGGTAGTGTTATTTTTGGTTTTTACTCTCGGTGTCCCTCTCCCACTTTGTTTGTTATAAATCAGTCTGATGACGTGAAGCATCATAACGCTACTTCTACAGGAAACAGTGCTGTTTTACACAGGAAGTCAATACAAAGACTCCTTTATTAAAAAACAAAGAAAATGGTGCAAGAGTTGATTTGACAAAACTGTTCCCAAATTTTGTTTTAGAAAAAAGACATAAGTTGACATGTCCCTTGGTGTGCTCCTTTCACATTGGTATGATTTTGTCATTTGTCAGTTGTTCTCTCTTTGCTGTAAATATCACAAATGGTCATAATGGTATGTCTGTTCTGAAAAACCCTCCGTTTGTCTACTGATGTGATGTTTGGAATGACAGCCAGCTTCAAGCAGTCTCTATCACAACTACTCACAGACTAGGGGATTATGAACGTGTTTCTATAGCAACGTGAGAGCATGAAGACATTATAAGAGCGAAACATTATCATTTTGTTCCTATTTATTATAACACCTGTCCTTTTTGGTATTTGTTAAACTGTTGTGTCTGCTAGAGTATACTGTAGGTGAGGAGTAAAGAAAGTACATTAAGTAAACTGTTCACTGCTAGACAATGGGACTTTTGGTCCTATTCAATCAAACCGGGAGCCGGGTCAGAAAAATGACATTCTCCTGCATAGCACAAAGGGATGTTTGAATGTATAGAGTTTCACAATGAAAATATTGTTTTGGTTGAGGAAATTAATCAAAACATGCATTATTACAGtgcaataaaaatgtatttttgttttacaCGGTATCCCAGTTAATGGACAACTGACAACAGCCCACTTCTTTTTTTGCTGGCTTCTAGTgtcacatacaggtatataaatgTTGTGTTCAAGTGCCTAATGAGGGTAAGATAATTATTAGTCATCTTTAACCCTGAATCCCATCTTAGGCttgcctacagcagagcctgtcATAGGGTTGTGTTTGAAACACAGGTAGCCTGAGCATGGAGAGATAGAGATTTAAATCCTAAGTGCTTTCTTTCTTTATgttTGTTAATACTGTTTTTGGCCTTCAACCATAGCATGCCTAATGTTAGTCGTCATTTGCACCAGTTAAACATATGTAAAAAAGATTTTAACATCACCAAATTCTATTTAGCATTTTATACTTTGGTTTTTGGAATGGTCAGTACTGTCATGAACAAATTCAACGTAAGAGTTACGATAATACAATAATCATTTAAATGTCAGATGTTTATTGTCTTTTGGCCAGTTCTTTAGAGGAAAAACTCAAAAGGGGAAAAATAAACTACAGGGTTTTTGGTTTTCTACACATTTCTTTGGTTACCtgtaacaaaaataaaatggGAGAAAAAGcagaaaatacataaaaaataacGTGTTTAAATTTGGTATGGCACTGCAGAGAAGGTAATGCTTTTATGCTCACTGAAAACAAAAGACTTTAAATCTCACGTGCTATTCCTTTGAGTTCAACTCACACAGTGAATTGCAGACAGCTtctatacagtaactatagtaacaaTAGAACTTTGAAATGAAACTGAGCAGAGTTGCCACGTTTTGGTGTCCCACACAAAGAATTCCCCCTTACTTCTTTAACATTTTGCACACACTTCCGGGCAGAAATTTGTGGGATGAGGTATTCTCTGACTGCCATAATATATTTTTTCAAGCATTGCTTTGTATCACAGCTGATGTTTCTCAACTAACTACGAGAAGATAAAATAAAAAGGAATGAAAGTTAGTTAAAAAGGAATAATACAAATGGATGATAATGTTGGGATTATTGGTGAGTGTTCTCAGGAGCTGAGGCCCTCGATTCTAAGTGCTATTCTCAATCTCCTGCCATCTAAACTGGCAAACCCAGACACACAGAAAGGTATTCATggtgggctggggtatagggaatTTTGGGACAATACTGCACTTTCTTTGCCACCAATACTAGTTTGGAATGGTGTGAACAAGCAGAGTTAATAAAAACTAAAAACTAAATTTTTACAAAATACACTTTGAAACAGAATTATATCACCATGGAAATATGAATCCtaaaaaataaatgaagataaCATCAAAGAAAGAAGGAAGTGAAAAAGCCACCACTTTTTGGATATAAAATGTTTTCTATTCCATAATAAATTCCATAATAAACTATTTTAGTCAGATATCTCTGTGTGGAtgatctctccttcctccccctctcaggTTGCCCTGTGCCCATCACTCTCACACATGAAGGAGGAGTAAAGCACCAAAGggtcttttttgggggggaaacaaTGTCTTCTTTATTTGTTTGTCATAATGAGTAAAGAGAGTCTTGTCTGGCTTGGGCAGAGAATGGCTAGAGAGTGGGCATAGGGCAGAGAATGGCTAGAGAGTGGGCATAGGGCAGAGAATGGCTAGAGAGTGGGCATAGGACAGAGAATGGCTAGAGAGTGGGCATAGGGCAGAGAATGGCTAGAGAGTGGGCATAGGACAGAGAATGGCTAGAGAGTGGGCATAGGGCAGAGAATGGCTAGAGAGTGGGCATAGGGCAGAGAATGGCTAGAGAGTGGGCATAGGGCAGAGAATGGCTAGAGAGTGGGCATAGGGCAGAGAATGGCTAGAGAGTGGGCATAGGGCAGAGAATGGCTAGAGAGTGGGCATAGGGCAGAATCCTGCAATCCAGTCTCAGTCCCACCTATGGATCACTGACTGGTTTGTAAGCTTGGTTTCTGATGTGTGAGCAGGTGAATCCTTGAGAAAACCGCTGTTCTTCCTTCCATCTATAAGCCCAGCAGTTCTTTCAGGCAAAagaagaaaagaaaaagaaaCTAACATGAccggagaagaggaggagagttaTACACCTCCTGGTGACTGTTCCAAACAATATATACACATGAtctgatgtgtgtgtctctccacactctctctcacacacctgtatgtataTTGTAGTGGTGTGAACATCAAACTACCAGCACTAAAGGACTGTAGGGCGGGCAGACCATCTGTGTGAAtcaacagggagaggagagaggagaggggaccctCCCTCCATATCACCACTGAGAGCTGTCTCTCTGACAATACGCTGCTCATCGGGTGAGGGtggagggggtgaggaggagggggtgaggtggGTGAAAATGTGTGGGAATAAAGCAATGCTCCAGAGTGTTATTTTTGCGTCGGTATGTAATGGAGGTCTAACCCTGTTTGTCAATGTTGTTGGTTTCTTGCTTTATAAAAATCATGatctttatcttttttttttatctctatCTTGTTTTTTTACGTGGTCATCATTTCGCTTCACTCCAATGGAGCGGGTGGGATTAAACCTCAAAGTCCCGTCCACTGGTTCAGCTCATCCAATCCTACTCCAGCTCCTCGGTGGGAAGCTCATCATCCAAATCGTGGTCATCGCGATCGCTAGGCAATGCCATGTTCTGAGTGACAGTTGCCATGAGCGACATGGAGCGGCTGTCCTCCTCGATCTCAGTGGGCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU712144 True 6302 lncRNA 0.41 3 56289480 56295845

Neighbor

gene id symbol gene type direction distance location
LOC110528023 errfi coding downstream 554459 55727429 ~ 55735021 (-)
pax7b pax7b coding downstream 590172 55620553 ~ 55699308 (-)
LOC118965301 NA coding downstream 639608 55644983 ~ 55649872 (-)
LOC110528021 dj-1 coding downstream 717753 55567122 ~ 55571727 (-)
LOC110528020 LOC106582955 coding downstream 722492 55420466 ~ 55566988 (-)
tfeb LOC106583139 coding upstream 186528 56482373 ~ 56593011 (-)
tmem183a tmem183a coding upstream 303398 56599243 ~ 56604594 (-)
myog tmyogenin coding upstream 421031 56716876 ~ 56720187 (-)
mdm4 mdm4 coding upstream 461221 56757066 ~ 56772426 (-)
sort1a LOC106583135 coding upstream 476970 56772815 ~ 56796604 (-)
G626213 NA non-coding downstream 146879 56134512 ~ 56142601 (-)
G625884 NA non-coding downstream 396735 55892467 ~ 55892745 (-)
G625865 NA non-coding downstream 416964 55870757 ~ 55872516 (-)
G625862 NA non-coding downstream 420289 55868938 ~ 55869191 (-)
G625832 NA non-coding downstream 463212 55826061 ~ 55826268 (-)
G626294 NA non-coding upstream 10808 56306653 ~ 56306858 (-)
G626299 NA non-coding upstream 13452 56309297 ~ 56309592 (-)
G626367 NA non-coding upstream 90330 56386175 ~ 56386471 (-)
G626369 NA non-coding upstream 91589 56387434 ~ 56387655 (-)
G626379 NA non-coding upstream 98502 56394347 ~ 56394571 (-)
G625472 LOC106582968 other downstream 1117280 55164492 ~ 55188756 (-)
G625426 NA other downstream 1214084 55072479 ~ 55075396 (-)
G622985 NA other downstream 2966649 53305536 ~ 53322831 (-)
G619733 NA other downstream 5330940 50956271 ~ 50958540 (-)
G627254 NA other upstream 395478 56691323 ~ 56696091 (-)
G627314 NA other upstream 538740 56834350 ~ 56835092 (-)
G627323 NA other upstream 551117 56846962 ~ 56852301 (-)
vamp3 vamp3 other upstream 557722 56853567 ~ 56869607 (-)
LOC110528040 NA other upstream 756346 57052191 ~ 57059527 (-)

Expression


Co-expression Network